Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq23 208 1e-48 >seq23 Length=2780208 Score = 208 bits (230), Expect = 1e-48 Identities = 572/868 (66%), Gaps = 29/868 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| ||||| || ||||| |||| || |||||| ||| Sbjct 1221663 CTGGTACTCGCCGACGCGCTTCTCGAAGAAATTGGTCTTGCCCTGCAGGGAGATGAGCTC 1221722 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||| || ||| |||||| ||| || | | | ||| | |||| | ||| Sbjct 1221723 CATCCAGTCGAACGGGTTGACGACGTTGTATATCTTCTTGT--GTCCCAGCGCCATGAGC 1221780 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| | || |||||| |||||||||| | |||||| | ||||||||| | ||| Sbjct 1221781 AGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCACGCCGTTCATGCCGACGAGC 1221840 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | ||| | || | || ||||| ||| || | ||||| || | || ||| Sbjct 1221841 GCGCAGGGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATC 1221900 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | ||||||| ||| | | ||| ||| ||| | | | ||||| | |||||| Sbjct 1221901 TCGCGGACGCGGGCCTCGTCGAGCTTGGAGCGGAGGAGGTCG---TAGAGTAGGCAGGCG 1221957 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||||| ||| ||||| || ||||||| ||||||||||| ||| || ||| Sbjct 1221958 AAGTCGCAGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGTCCCGGC 1222017 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| || | || ||||||||||| || || ||| ||||| ||||||||||||||| Sbjct 1222018 ATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCC 1222077 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC-TTGTCTGAGATCCA 48315 || || ||||||||| ||| | ||||| |||||| || | | |||||| Sbjct 1222078 TCGACGCAGGCGAACGCGACGAG--GCGCTCCG--CGAAGCGCTCGCCGCCGTCGATCCA 1222133 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC----ATCGTCTCTATGGCCCGGA 48371 | | ||||| || ||||| | ||| ||| | |||||| ||||| |||| Sbjct 1222134 GCGCATGGCCCACTCGGCCTT----GCGGCGCACGGCGGGAACCGTCTCGATGGCGCGGA 1222189 Query 48372 A---GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428 | | | | ||| ||| | |||| | || || |||||| | ||||| Sbjct 1222190 ACAGGCGGTCCTT---CTCCGCGCCGTCGCGGATGTACGTCTCCAGCAGCAGCGAGTACA 1222246 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| ||||| | ||||| || ||||||||||||||||| ||||| | ||||| | Sbjct 1222247 TCTCCGAGTGGATGTTCTCGATGGCGATCTGGAACCCGTAAAAGGCGCGCGCCTCGGCGA 1222306 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 |||| || || | ||| | | || ||||| || || || || || || | Sbjct 1222307 CCTGGACGTCCGACATGAAGCGGGACGCGAGGTTCTCCAGCACGATGCCGTCGGAGGCGG 1222366 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCC 48605 | |||||||| || || || | |||||||||||||| | || |||| || | || Sbjct 1222367 CGAAGAAGGCCAGCACGTGGGAGATGAAATGGCGCTCGTCGGGGTTGAGGGCGGCGTCCC 1222426 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || | |||| |||||||| || || | ||||||||||| || | || | Sbjct 1222427 AGTGGCGCGCGTCGGCAGAGAGGTCCACCTCCTCGGCGGTCCAGAAGGAGGCTACCGCCT 1222486 Query 48666 TTTTGTACATGCCCCATATGTCCGGATA 48693 | ||||| | |||| || | ||| || Sbjct 1222487 TCTTGTAAAACTCCCAGATCTGCGGGTA 1222514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931525522400000