Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq23 179 7e-40 >seq23 Length=2780208 Score = 179 bits (198), Expect = 7e-40 Identities = 564/861 (66%), Gaps = 35/861 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| | ||| |||||||||||| ||| | || || Sbjct 1222505 ATCTGGGAGTTTTACAAGAAGGCGGTAGCCTCCTTCTGGACCGCCGAGGAGGTGGACCTC 1222446 Query 25537 GCCAAGGACATGGACGGCTGGTACGC-----TCTATCCAAAGACGAGCAGCATTTTCTCA 25591 | ||| | | |||| |||| || | || ||||||| ||||| || Sbjct 1222445 TCTGCCGACGCGCGCCACTGGGACGCCGCCCTCAACCCC--GACGAGCGCCATTTCATCT 1222388 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 ||||| |||| ||||| || ||||| || || || ||| ||||| || ||| Sbjct 1222387 CCCACGTGCTGGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTGGAGAACCTC-GCGTCC 1222329 Query 25652 -GATTCACCAGGGAAGTGCAGTACGTGGAGGC-CAAGTGTTTCTACGGTTTCCAGATGGC 25709 | |||| ||| || ||| || ||||| | | ||| ||||| |||||||| || Sbjct 1222328 CGCTTCATGTCGGACGTCCAGGTCGCCGAGGCGCGCGCCTTT-TACGGGTTCCAGATCGC 1222270 Query 25710 CATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGT 25769 |||||| || | ||||| ||| |||| | ||| ||| ||||||||| |||| Sbjct 1222269 CATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTGGAGACGTACATCCGCGACGG 1222210 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 ||| |||| || || ||||| | ||||||||| | ||| | | | ||||| Sbjct 1222209 CGCGGAGAAGGACCGCCTGTTCCGCGCCATCGAGACGGTTCCCGCCGTGCGCCGCAAGGC 1222150 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 |||||||||| |||||| || || ||||||| || ||||| || || | Sbjct 1222149 CGAGTGGGCCATGCGCTGGATCGACGGCGGCGAGCGCTTCGCG----GAGCGCCTCGTCG 1222094 Query 25889 CCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCT 25946 | || || ||| || ||||||||||| ||| || || || |||| ||||||||||||| Sbjct 1222093 CGTTCGCCTGC-GTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGCT 1222036 Query 25947 CAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGA 26006 |||| || || |||||| || || ||| ||||||||||||||| | ||||| Sbjct 1222035 CAAGAAGCGCGGCCTCATGCCGGGACTCACCTTCTCCAACGAGCTCATCTCGCGCGACGA 1221976 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC 26066 ||| || ||| | || || |||||||| |||||| | || | | | | ||| | || Sbjct 1221975 GGGCCTGCACTGCGACTTCGCCTGCCTACTCTAC---GACCTCCTCCGCTCCAAGC--TC 1221921 Query 26067 TCAAGAGAC---CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCN 26123 | ||| | |||| | ||| || || || || || |||||| ||||| Sbjct 1221920 -GACGAGGCCCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGCGCGAGTTCGT 1221862 Query 26124 NNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACAT 26183 | ||||||||| | ||||||||||| ||||| Sbjct 1221861 CTGCGACGCGCTCCCCTGCGCGCTCGTCGGCATGAACGGCGTGCTCATGAGCCAGTACAT 1221802 Query 26184 TGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTACAGTACGC 26242 |||| || ||||||| ||||| || | ||||||| | | ||| || | ||| Sbjct 1221801 CGAGTTCGTCGCCGACCGCCTGCTCATGGC-GCTGGGA--CACAAGAAGATATACAACGT 1221745 Query 26243 C--TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGA 26300 | ||||||||||||| ||||| ||| || || | || |||||||| ||||| || Sbjct 1221744 CGTCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAATTTCTTCGA 1221685 Query 26301 AAAGAGGGTCGGCGACTATCA 26321 ||| | |||||||| || || Sbjct 1221684 GAAGCGCGTCGGCGAGTACCA 1221664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928837543400000