Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq403 129 4e-24 seq8 129 4e-24 seq72 105 4e-17 seq57 100 2e-15 seq17 87.8 1e-11 seq80 86.0 4e-11 seq77 86.0 4e-11 >seq403 Length=29911 Score = 129 bits (142), Expect = 4e-24 Identities = 140/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 474680 GTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCA 474739 ||||| |||| ||||| | || ||| |||||||||| || || | | ||| Sbjct 23910 GTTTTGACCAAGATGAAGGAGACAGCGGAAGCATATCTTGGCAAATCTGTCTCAAAGGCA 23851 Query 474740 GTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGA 474799 || ||||||||||||||||||| |||||| |||| |||||||| || || |||||||| Sbjct 23850 GTGGTTACTGTTCCAGCATATTTCAATGATGCTCAGCGTCAAGCCACAAAGGATGCGGGT 23791 Query 474800 AGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCT 474859 | ||||| || ||| | ||| | | ||||| |||||||| |||||||| || || || Sbjct 23790 CGGATTGCTGGCCTTGAGGTTGAAAGGATTATCAATGAACCGACAGCAGCTGCTCTGTCT 23731 Query 474860 TATGGT 474865 |||||| Sbjct 23730 TATGGT 23725 >seq8 Length=4429347 Score = 129 bits (142), Expect = 4e-24 Identities = 140/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 474680 GTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCA 474739 ||||| |||| ||||| | || ||| |||||||||| || || | | ||| Sbjct 1911507 GTTTTGACCAAGATGAAGGAGACAGCGGAAGCATATCTTGGCAAATCTGTCTCAAAGGCA 1911448 Query 474740 GTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGA 474799 || ||||||||||||||||||| |||||| |||| |||||||| || || |||||||| Sbjct 1911447 GTGGTTACTGTTCCAGCATATTTCAATGATGCTCAGCGTCAAGCCACAAAGGATGCGGGT 1911388 Query 474800 AGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCT 474859 | ||||| || ||| | ||| | | ||||| |||||||| |||||||| || || || Sbjct 1911387 CGGATTGCTGGCCTTGAGGTTGAAAGGATTATCAATGAACCGACAGCAGCTGCTCTGTCT 1911328 Query 474860 TATGGT 474865 |||||| Sbjct 1911327 TATGGT 1911322 Score = 129 bits (142), Expect = 4e-24 Identities = 140/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 474680 GTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCA 474739 ||||| |||| ||||| | || ||| |||||||||| || || | | ||| Sbjct 1948212 GTTTTGACCAAGATGAAGGAGACAGCGGAAGCATATCTTGGCAAATCTGTCTCAAAGGCA 1948153 Query 474740 GTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGA 474799 || ||||||||||||||||||| |||||| |||| |||||||| || || |||||||| Sbjct 1948152 GTGGTTACTGTTCCAGCATATTTCAATGATGCTCAGCGTCAAGCCACAAAGGATGCGGGT 1948093 Query 474800 AGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCT 474859 | ||||| || ||| | ||| | | ||||| |||||||| |||||||| || || || Sbjct 1948092 CGGATTGCTGGCCTTGAGGTTGAAAGGATTATCAATGAACCGACAGCAGCTGCTCTGTCT 1948033 Query 474860 TATGGT 474865 |||||| Sbjct 1948032 TATGGT 1948027 >seq72 Length=1231634 Score = 105 bits (116), Expect = 4e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 || || |||||||||||||| ||||| |||||| | || |||||||| || || ||||| Sbjct 277053 GCTGTGATTACTGTTCCAGCTTATTTCAATGATGCCCAGCGTCAAGCCACAAAGGATGCA 276994 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | ||||| || || ||||| | | || || ||||||||||||||||| || || Sbjct 276993 GGCCGCATTGCTGGCCTCGATGTTGAAAGGATCATCAATGAACCAACAGCAGCTGCTCTG 276934 Query 474857 GCTTATGG 474864 ||||||| Sbjct 276933 TCTTATGG 276926 >seq57 Length=1649376 Score = 100 bits (110), Expect = 2e-15 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||| || || || | |||||||| ||| || | ||| |||||||| | || Sbjct 1450326 CGAAGGCGAAGGACCAAGTGAAGTGTGGATTCCTTCTGGATATTGTAATCAGCCAATGTG 1450267 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | ||| || || |||||||||||||| ||||| | || || ||||| || || ||| Sbjct 1450266 CGTCCATCCTCCAGCTGCTTTCCAGCAAATATAAGCCTCTGCTGGTCAGGTGGGATGCCT 1450207 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAG 480730 ||||||||||| |||||| || ||| ||||| || |||| | | | || ||||| Sbjct 1450206 TCCTTGTCTTGGATCTTTGCCTTCACATTATCAATGGTGTCAGAGCTCTCAA-CCTCAAG 1450148 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| ||||| || || || || Sbjct 1450147 AGTTATGGTCTTTCCAGTGAGCGTCTTCACAAAGATCTG 1450109 Score = 95.1 bits (104), Expect = 8e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 480557 ACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTT 480616 ||| || ||||| ||||||||| ||| || | || || || || || || | | Sbjct 1450093 ACGAAGGACAAGGTGAAGTGTAGATTCCTTCTGGATGTTGTAGTCTGCCAGTGTGCGGCC 1450034 Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||||||||| |||||||| ||||| || || | || || || ||||| || || ||||| Sbjct 1450033 ATCTTCAAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGGATACCCTCCTT 1449974 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGTAA 480735 ||| || ||||| || ||| ||||| || |||| | | || | |||| || | Sbjct 1449973 GTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCAGAACTCTCAACCT-CAAGTGTGA 1449915 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || ||||||||||| ||||| || || Sbjct 1449914 TCGTCTTCCCAGTGAGAGTCTTCACGAAGATCTG 1449881 Score = 86.0 bits (94), Expect = 4e-11 Identities = 154/220 (70%), Gaps = 10/220 (5%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGT--ACT--TTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||| |||||||| || || || ||| |||| || || || |||||||| || Sbjct 1449867 AGACGCAGTACAAGGTGGAGGGTCGACTCCTTCTGTATG----TTGTAGTCAGCTAGGGT 1449812 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||| || ||||| |||||||| || || | || || || ||||| || || Sbjct 1449811 ACGGCCATCTTCGAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCCGGAGGGATGCC 1449752 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAA 480729 ||||||||| || ||||| || ||| ||||| || |||| | | | || | ||| Sbjct 1449751 TTCCTTGTCCTGGATCTTGGCCTTAACATTGTCAATTGTGTCAGAGCTCTCAACCTCCAA 1449692 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || || |||||||| || || || Sbjct 1449691 -AGTGATTGTCTTGCCTGTAAGGGTCTTAACAAAGATCTG 1449653 >seq17 Length=3182705 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || |||||||| || ||||| || || |||||||| || || Sbjct 3005720 ACGAAGACGGAGCACCAGATGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGCAAGGGT 3005779 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| || || ||||| ||||| || || || | || || || || || || || Sbjct 3005780 ACGTCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGGATGCC 3005839 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||||| ||||| || || || || || |||| || | | |||| Sbjct 3005840 CTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAGATGACTCTA-CCTCAA 3005898 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || || || || ||||| ||||| ||||| || || Sbjct 3005899 GGGTGATGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTG 3005938 >seq80 Length=928440 Score = 86.0 bits (94), Expect = 4e-11 Identities = 120/166 (72%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 321744 TCAATATTATGTTCCGTAACAATTTCATCAAATGTAAGATTTTTTGCAATAATTAATGGT 321803 ||||| |||| | || ||| |||| | |||| || || |||||| | ||||| Sbjct 60334 TCAATGTTATATGGGGTGACAGTTTCTGGATATGTCAGGTTCAGAGCAATACTCCATGGT 60393 Query 321804 AAACCAACTTCATTCAGTGC-AATATTTGGATCAGATGTGATAACTGTACGACCAGACAT 321862 | || | || || || || |||||||||||| | ||||||||||| || | || | Sbjct 60394 ACTCCCAATTGAT-CAATGTTAATATTTGGATCTGGGGTGATAACTGTGCGGGCTGAGAA 60452 Query 321863 ATCAACACGTTTACCCATAAGATTTCCTCTAATACGACCTTCTTTT 321908 |||||| || || ||||| | || ||||||||||| ||||||||| Sbjct 60453 ATCAACGCGCTTGCCCATCAAGTTCCCTCTAATACGGCCTTCTTTT 60498 >seq77 Length=972522 Score = 86.0 bits (94), Expect = 4e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | || ||||| || || || || || ||||| | || || || || |||| Sbjct 235175 ATGCTGTTGTCACAGTTCCTGCCTACTTCAACGACTCTCAGAGGCAGGCCACCAAGGATG 235116 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | ||| ||||| ||||| ||||| | ||||| || ||||| || || || || || Sbjct 235115 CTGGAGTGATTGCTGGTCTCAATGTGCTCCGTATCATCAATGAGCCTACCGCTGCAGCTA 235056 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| ||||||||||| ||||| Sbjct 235055 TTGCATATGGTCTTGACAAGAA 235034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268152390717500