Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq15 639 1e-178 seq72 183 3e-41 seq19 93.3 5e-14 seq28 86.0 7e-12 >seq15 Length=3529114 Score = 639 bits (708), Expect = 1e-178 Identities = 755/1016 (74%), Gaps = 6/1016 (1%) Strand=Plus/Minus Query 162117 TTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGA 162176 |||||| | | ||||||||| | ||| ||||||||||||||||| || ||||| || Sbjct 3061865 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGC 3061806 Query 162177 CTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTC 162236 || | || ||||| ||||||| | ||| | ||||||||| |||| ||||||||||| Sbjct 3061805 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 3061746 Query 162237 GTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGT-GCAAACTTTCT 162295 || || ||||||||| || ||| | || ||||||||| | || ||| |||| ||||| Sbjct 3061745 GTAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGCAA--TTTCT 3061688 Query 162296 TA-CTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGG 162354 || | ||||||||||| || || || | | | | || ||| | |||| ||||||| Sbjct 3061687 TAACGGCGGCAGTTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGG 3061628 Query 162355 GTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTG 162414 | || || | |||||||| || | || ||||||||| | ||||| || |||||||||| Sbjct 3061627 GACCGGAAGCACAAGGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTG 3061568 Query 162415 TGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGC-A 162473 | || ||||| || || |||||||| |||||||||||| | || || |||||||| || | Sbjct 3061567 TCGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTA 3061508 Query 162474 CGACTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTC 162533 | || || | | || ||||| ||||| ||| | ||||| ||||| || ||||| || Sbjct 3061507 GGTCTGTTCAAT-TGCGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCTGTTTTT 3061449 Query 162534 GTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTC 162593 ||| || || ||||| ||||| |||||||||| |||||||| |||||| || Sbjct 3061448 GTTTCCGTATTCCTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTTT 3061389 Query 162594 GGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTA 162653 || || ||||| || || |||||| | || ||| ||||||| || ||||| |||||| | Sbjct 3061388 GGCGTAGCAGCTATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTG 3061329 Query 162654 AATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTATT 162713 || || ||||| |||||||| || || || | | |||| || | || | |||||| Sbjct 3061328 AACCCCTTTCATATGATGGGAGTTGCCGGAGTATTAGGTGCAGCTCTCCTATGCGCTATT 3061269 Query 162714 CATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTTTAAA 162773 ||||| | || || ||||| || || | ||||||||| || ||||| || || | Sbjct 3061268 CATGGGGCTACTGTAGAAAACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCGA 3061209 Query 162774 GCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGG 162833 || ||| || |||| || | ||||||||| ||||| ||||| || || |||||||| ||| Sbjct 3061208 GCTTTTAACCCCACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 3061149 Query 162834 TCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTTT 162893 || || || || ||| |||||||| || || |||||||| |||||||||||||| ||| Sbjct 3061148 TCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 3061089 Query 162894 GTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTCAATCTT 162953 || ||||||| ||| | |||| ||| |||| || | |||| || ||||| || || Sbjct 3061088 GTACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTA 3061029 Query 162954 CGTGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGTTTGAGACG 163013 ||||| || ||||| || || || ||| | ||||| || ||||| ||||| |||||||| Sbjct 3061028 CGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACT 3060969 Query 163014 TTCTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCACCAGTGGAC 163073 ||||| || || || |||||| | || || || |||| || ||| | ||| | ||| Sbjct 3060968 TTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGAT 3060909 Query 163074 CAACCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAACGCTCT 163129 || |||||||| || || | |||||||| ||||| | ||| | || |||||||| Sbjct 3060908 CAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 3060853 >seq72 Length=1231634 Score = 183 bits (202), Expect = 3e-41 Identities = 211/279 (76%), Gaps = 4/279 (1%) Strand=Plus/Plus Query 162367 AAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACG 162426 ||||||| || | || ||||||||| | ||||| || ||||||||||| || ||||| | Sbjct 291129 AAGGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTCGCTCTCCATG 291188 Query 162427 GAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGC-ACGACTTATCGGT 162485 | || |||||||| |||||||||||| | || || |||||||| || | | || || | Sbjct 291189 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGGTCTGTTCAAT 291248 Query 162486 ATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTCGTTAGTGTTTTT 162545 | || ||||| ||||| ||| | |||| ||||| || ||||| || ||| || || Sbjct 291249 -TGCGGCCTTATAATGCAATTTCATTCTTTGGTCCAATCGCTGTTTTTGTTTCCGTATTC 291307 Query 162546 CTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTC-GGGGTCGCAGC 162604 ||||| ||||| |||||||||| |||||||| |||||| |||| || || ||||| Sbjct 291308 CTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCG-AGTTCTGGCGTAGCAGC 291366 Query 162605 AATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAA 162643 || || ||||| | || ||| ||||||| || ||||| Sbjct 291367 TATATTTTGATTCATCCTTTTCTTCCAAGGATTTCATAA 291405 >seq19 Length=3122409 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 158332 GACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGC 158391 |||||| ||||||||| ||| || ||||| | ||| |||| || ||||||||| Sbjct 191219 GACGACGTGTACATCCTGGACCAGGCCGAGGAGGAGGGGATCGACCTGCCATACTCGTGC 191278 Query 158392 CGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGC 158451 || || || | || || ||||| || || || ||||||| ||| |||| ||||| | Sbjct 191279 CGCGCCGGGTCCTGCTCCTCGTGCGCCGGCAAGATCGTCTCCGGCTCCGTGGACCAGTCC 191338 Query 158452 GACCAGTCCTTCCTGGACGATGACCA 158477 |||||| |||||| ||||| ||||| Sbjct 191339 GACCAGAGCTTCCTCGACGACGACCA 191364 >seq28 Length=2533697 Score = 86.0 bits (94), Expect = 7e-12 Identities = 151/219 (69%), Gaps = 12/219 (5%) Strand=Plus/Plus Query 162297 ACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGT 162356 || ||||||||||| | || || || | | | || ||| | ||| |||||||| Sbjct 2401559 ACAGCGGCAGTTTCCATCCCTGCTGATAGTTTAGCACACTCTTTGTTGCCACTATGGGGA 2401618 Query 162357 CCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTG 162416 || || | |||||||| || | || ||||| ||| | ||||| ||||| Sbjct 2401619 CCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGGGG----------TTTGTC 2401668 Query 162417 GCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCAC-G 162475 || |||| || || |||||||| |||||||||||| | || || |||||||| || | | Sbjct 2401669 GCTTTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCAG 2401728 Query 162476 ACTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTC 162514 || || | | || ||||| ||||| ||| | ||||| Sbjct 2401729 TCTGTTCAAT-TGCGGCCTTATAATGCAATTTCATTCTC 2401766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547742920725000