Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq15 598 5e-166 seq72 167 3e-36 >seq15 Length=3529114 Score = 598 bits (662), Expect = 5e-166 Identities = 743/1016 (73%), Gaps = 6/1016 (1%) Strand=Plus/Plus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | ||| | ||||| ||||| |||| || |||||||| || ||||| Sbjct 3060853 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCTGATCC 3060912 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | ||||| ||| ||||| | ||| || || || || || || || |||||||| ||| Sbjct 3060913 TGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGAAAGTC 3060972 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || |||||||| ||||| | ||| || ||||| || |||||||| ||||| ||| Sbjct 3060973 TCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACGTAGG 3061032 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || ||||| || |||| | || || | ||| |||| | ||| | || || ||||| Sbjct 3061033 TTCAGAGCCAGGCCAACTACGCCAATAGCACTCATCCATAAACCGGTGACGGGTACAAAT 3061092 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 |||||||||||||| ||||| | ||||| ||| |||| |||||||||||| ||||| Sbjct 3061093 AGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGGACCAA 3061152 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 || ||||| || || |||||||||||||| |||||| |||| |||| | || ||| | Sbjct 3061153 AAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCCGCTTGAGTGGGGTTAAAAGCTCGG 3061212 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || || ||||| |||||||||||| | |||||||| || ||||| | || || || Sbjct 3061213 AAGGTATTTGCACCATCACCATCTTCGAATAGAGTGTTTTCTACAGTAGCCCCATGAATA 3061272 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | || || ||| | || | | || ||||| ||||||||||| || ||||| | | Sbjct 3061273 GCGCATAGGAGAGCTGCACCTAATACTCCGGCAACTCCCATCATATGAAAGGGGTTCAAC 3061332 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 ||||| ||||| || || || | ||| || | ||||| |||||| ||||| || ||||| Sbjct 3061333 GTCCAATTATGAAATCCTTGGAAGAAAAGGATGAATCGAAATATAGCTGCTACGCCAAAA 3061392 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 || ||||||||||||| || ||||| || ||||| || || || || |||||| Sbjct 3061393 CTCGGTGCAAAGAACCAACCAGATTGTCCCAGTGGATAAATAAGGAATACGGAAACAAAA 3061452 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369 |||||||| || |||||||| | ||| ||||| || || || | | || ||||||| Sbjct 3061453 ACAGCGATTGGACCAGAGAATGAAATTGCATTATAAGGCCGCAATTGAACAGACCTAGCA 3061512 Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429 | || |||||||| | ||||||||| || || ||||| || || |||||||| |||||| Sbjct 3061513 AGTTCAAATTGACGTAACATGAAACCTATTAGTGCAAAAGCCCCATGGAGAGCGACAAAA 3061572 Query 102430 GCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAA 102489 | ||| || ||||| | |||| ||| | ||||| ||||| ||||| || ||||| Sbjct 3061573 GTCCACAGACCCCCTAATTGGCACCAACGAGTAAAATCCCCTTGTGCTTCCGGTCCCCAT 3061632 Query 102490 AGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAA 102549 ||||| | | ||| || | | | | |||||| || || || || || || | |||| Sbjct 3061633 AGTAGCAACAAAGAGTGTGCTAAACTATTAGCAGGGGTGGAAACTGCCGCCGTTAAGAAA 3061692 Query 102550 TTAGCACCTTC---AAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAAC 102606 || |||||| | | ||||| || | || ||||||||||| ||||| |||| Sbjct 3061693 TTGCAACCTTCCAAATAGGAACTA---GCCAATCCATGGGTATACCAAGAAGTTACAAAA 3061749 Query 102607 GTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCA 102666 || || || |||| ||| ||||| | |||| ||||||| ||||| || | ||| || Sbjct 3061750 GTAGTCCCTGTAAACCAACCCCCTAAAGCGAAATAAGCACAAGGAAAGAGCAATAGGCCG 3061809 Query 102667 GACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAA 102722 ||||| || ||||| || || || || | | | |||||| |||| || ||||| Sbjct 3061810 GACCATCCTACAAAAACGAAACGGTCCCTTCGTAACCAGTCGTCCATAATATCAAA 3061865 >seq72 Length=1231634 Score = 167 bits (184), Expect = 3e-36 Identities = 190/255 (75%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 102196 TTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAACGAGGGC 102255 ||||| || || || | ||| || | ||||| |||||| ||||| || ||| | || Sbjct 291405 TTATGAAATCCTTGGAAGAAAAGGATGAATCAAAATATAGCTGCTACGCCAGAACTCGGT 291346 Query 102256 GCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAAACAGCG 102315 ||||||||||||| || ||||| || ||||| || || || || |||||||||||| Sbjct 291345 GCAAAGAACCAACCAGATTGTCCCAGTGGATAAATAAGGAATACGGAAACAAAAACAGCG 291286 Query 102316 ATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCCAACTCG 102375 || || ||| |||| | ||| ||||| || || || | | || ||||||| | || Sbjct 291285 ATTGGACCAAAGAATGAAATTGCATTATAAGGCCGCAATTGAACAGACCTAGCAAGTTCA 291226 Query 102376 AATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAAGCCCAG 102435 |||||||| | ||||||||| || || ||||| || || |||||||| ||||||| ||| Sbjct 291225 AATTGACGTAACATGAAACCTATTAGTGCAAAAGCCCCATGGAGAGCGACAAAAGTCCAC 291166 Query 102436 AGTCCCCCAAGTTGG 102450 || ||||| | |||| Sbjct 291165 AGACCCCCTAATTGG 291151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633508650675000