Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq15 379 2e-100 seq122 98.7 1e-15 seq72 84.2 3e-11 >seq15 Length=3529114 Score = 379 bits (420), Expect = 2e-100 Identities = 709/1039 (68%), Gaps = 23/1039 (2%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | ||||| || || || ||||||| || ||| ||||| || || Sbjct 3060849 TTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCTG 3060908 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || || |||||| || | || || || || | |||||| || || || ||||| Sbjct 3060909 ATCCTGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGAA 3060968 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || || || ||||| ||||| | || || || || || ||||| || || | Sbjct 3060969 AGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACG 3061028 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 ||||| || || || || || | || |||| |||| | ||| |||| || || Sbjct 3061029 TAGGTTCAGAGCCAGGCCAACTACGCCAATAGCACTCATCCATAAACCGGTGACGGGTAC 3061088 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || | ||||| ||| ||||| | | ||| || ||||| || | |||||| || || || Sbjct 3061089 AAATAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGGA 3061148 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| || | ||| || || | ||| |||||||||||| | || || || | || || Sbjct 3061149 CCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCCGCTTGAGTGGGGTTAAAAGC 3061208 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 || ||| || | | ||| ||| || || || ||| | ||| Sbjct 3061209 TCGGAAGGTATTTGC---------ACCATCACCATCTTC-GA---------ATAGAGTGT 3061249 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 |||| || || || |||||||| || ||||| | ||| |||||| || ||| ||||| Sbjct 3061250 TTTCTACA--GTAGCCCCATGAATAGCGCATAGGAGAGCTGCACCTAATACTCCGGCAAC 3061307 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||| ||||| || ||||| || || || || ||||| | ||| | ||| | Sbjct 3061308 TCCCATCATATGAAAGGGGTTCAACGTCCAATTATGAAATCCTTGGAAGAAAAGGATGAA 3061367 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 ||||| || ||||| || || || ||||| |||||||||| || || ||||| Sbjct 3061368 TCGAAATATAGCTGCTACGCCAAAACTCGGTGCAAAGAACCAACCAGATTGTCCCAGTGG 3061427 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 ||| || || || | | | || || ||||| | ||||||||| | ||| || || Sbjct 3061428 ATAAATAAGGAATACGGAAACAAAAACAGCGATTGGACCAGAGAATGAAATTGCATTATA 3061487 Query 123526 AGGTCTAATGCCTACAAGTCCT-GCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTC 123584 ||| | | ||| | ||| || | |||||||| | | |||||||||||| ||| Sbjct 3061488 AGGCCGCAATTGAACA-GACCTAGCAAGTTCAAATTGACGTAACATGAAACCTATTAGTG 3061546 Query 123585 CAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGA 123644 |||| | ||||| | || ||||| |||| ||||| || | ||| |||||||| | Sbjct 3061547 CAAAAGCCCCATGGAGAGCGACAAAAGTCCACAGACCCCCTAATTGGCACCAACGAGTAA 3061606 Query 123645 ATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAG 123704 | ||||||||||| |||||||| || | || | | || | | | | ||| Sbjct 3061607 AATCCCCTTGTGCTTCCGGTCCCCATAGTAGCAACAAAGAGTGTGCTAAACTATTAGCAG 3061666 Query 123705 GTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCAT 123764 | ||||| ||||| || |||||||| || || || | ||| ||| || | |||| Sbjct 3061667 GGGTGGAAACTGCCGCCGTTAAGAAATTGCAACCTTCCAAATAGGAACTAGCCAATCCAT 3061726 Query 123765 GTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACG 123824 | |||||||| || || || || ||||| ||| |||||||| || | | | ||| | Sbjct 3061727 GGGTATACCAAGAAGTTACAAAAGTAGTCCCTGTAAACCAACCCCCTAAAGCGAAATAAG 3061786 Query 123825 CACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACC 123884 ||||||| | || || || || |||||||||| || || ||||| || || ||||| Sbjct 3061787 CACAAGGAAAGAGCAATAGGCCGGACCATCCTACAAAAACGAAACGGTCCCTTCGTAACC 3061846 Query 123885 AGTCGTCAAGAACATCAAA 123903 ||||||| | || |||||| Sbjct 3061847 AGTCGTCCATAATATCAAA 3061865 >seq122 Length=273706 Score = 98.7 bits (108), Expect = 1e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||||||||| | ||||||||| || || ||||||||||| || |||||||| || Sbjct 135599 ACACCAATAGGACCCATGCCAGGACCGCCTCCACCATGTGGAATGCAAAATGTCTTGTGA 135540 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGT 138299 | || |||||||| |||||||| ||| | || ||| ||| || || |||||| Sbjct 135539 AGGTTAAGATGACAAACATCTGCTCCAATGAAACCTGGGCTTGTTAACCCAACCTGT 135483 >seq72 Length=1231634 Score = 84.2 bits (92), Expect = 3e-11 Identities = 179/265 (68%), Gaps = 2/265 (1%) Strand=Plus/Minus Query 123377 TTGTGGAAACCTTGTATGAATAAGATATAACGAAAGATTGCTGCGACACCGAATGATGGT 123436 || || || ||||| | ||| | ||| | | ||| || ||||| || || | ||| Sbjct 291405 TTATGAAATCCTTGGAAGAAAAGGATGAATCAAAATATAGCTGCTACGCCAGAACTCGGT 291346 Query 123437 GCGAAGAACCAACTGTGCTGACCTAGTGGATAGATCAGAAAGATGCTAGTGAAGACTGCG 123496 || |||||||||| || || |||||||| || || || | | | || || ||| Sbjct 291345 GCAAAGAACCAACCAGATTGTCCCAGTGGATAAATAAGGAATACGGAAACAAAAACAGCG 291286 Query 123497 ATAACAGCAGAGAATGCGAGTGCGTTGTAAGGTCTAATGCCTACAAGTCCT-GCGATCTC 123555 || | || |||||| | ||| || ||||| | | ||| | ||| || | || Sbjct 291285 ATTGGACCAAAGAATGAAATTGCATTATAAGGCCGCAATTGAACA-GACCTAGCAAGTTC 291227 Query 123556 AAATTGTCTGAGCATGAAACCTATGAGTCCAAAGACTCCATGTAATGCTACAAAGTTCCA 123615 |||||| | | |||||||||||| ||| |||| | ||||| | || ||||| |||| Sbjct 291226 AAATTGACGTAACATGAAACCTATTAGTGCAAAAGCCCCATGGAGAGCGACAAAAGTCCA 291167 Query 123616 TAGACCTCCGAGTTGTAACCAACGA 123640 ||||| || | ||| |||||||| Sbjct 291166 CAGACCCCCTAATTGGCACCAACGA 291142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578993876575000