Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq15 563 1e-155 seq72 183 4e-41 >seq15 Length=3529114 Score = 563 bits (624), Expect = 1e-155 Identities = 745/1025 (73%), Gaps = 14/1025 (1%) Strand=Plus/Plus Query 23386 ATCAAAGAGCATTACCTCTTGGAAGGATTTCCTCA---ATTACAGGAAAGTTTTCGTGTG 23442 || ||||||| || || | ||| || | |||||| | || | || ||||| || | Sbjct 3060848 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGA---TTTTCATGAG 3060904 Query 23443 GTTGGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGT 23502 | || || || |||||| |||| | || | ||| || | ||||||||| |||| Sbjct 3060905 GCTGATCCTGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGT 3060964 Query 23503 AGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAG 23562 |||| |||||| | | |||||| || ||||| || || || || || ||||| | Sbjct 3060965 AGAAAGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGG 3061024 Query 23563 CACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAG 23622 |||| || || ||||| || |||| | |||||||| | | ||| | ||| |||| | Sbjct 3061025 CACGTAGGTTCAGAGCCAGGCCAACTACGCCAATAGCACTCATCCATAAACCGGTGACGG 3061084 Query 23623 GAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTT 23682 | ||||| | ||||||||| || |||||||| |||||| ||| ||||| || ||||||| Sbjct 3061085 GTACAAATAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTT 3061144 Query 23683 GTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGA 23742 | |||||||| || || || || ||||| ||||| || || ||| | ||||||| | | Sbjct 3061145 GGGACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCCGCTTGAGTGGGGTTAA 3061204 Query 23743 ACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTC--ATACAGTGTATTCTCGACAGTAAC 23800 | ||| || || ||||| || |||||||| ||| ||||| |||| |||||| | Sbjct 3061205 AAGCTCGGAAGGTATTTGCACCATCACCATCTTCGAATAGAGTGTTTTCT--ACAGTAGC 3061262 Query 23801 TCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAA 23860 ||||||||||| | || || ||| | || | || || ||||||||||||||||| || Sbjct 3061263 CCCATGAATAGCGCATAGGAGAGCTGCACCTAATACTCCGGCAACTCCCATCATATGAAA 3061322 Query 23861 GGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGC 23920 |||||| | |||||| |||||||| || |||| ||| || | ||| | || || || || Sbjct 3061323 GGGGTTCAACGTCCAATTATGAAATCCTTGGAAGAAAAGGATGAATCGAAATATAGCTGC 3061382 Query 23921 AACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATAC 23980 || || |||||||| |||||||||||| || ||||||| ||||| || |||||||| Sbjct 3061383 TACGCCAAAACTCGGTGCAAAGAACCAACCAGATTGTCCCAGTGGATAAATAAGGAATAC 3061442 Query 23981 AGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAAT 24040 || || || ||||| || |||||||| || | ||| ||||| || || || | | || Sbjct 3061443 GGAAACAAAAACAGCGATTGGACCAGAGAATGAAATTGCATTATAAGGCCGCAATTGAA- 3061501 Query 24041 TAGACGT-GCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGA 24099 |||| | || |||||||| ||||||||||| |||||||| |||||||| || || |||| Sbjct 3061502 CAGACCTAGCAAGTTCAAATTGACGTAACATGAAACCTATTAGTGCAAAAGCCCCATGGA 3061561 Query 24100 GAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACT 24159 |||| ||||| | ||| || || || | |||| ||| || ||| |||||||| | | Sbjct 3061562 GAGCGACAAAAGTCCACAGACCCCCTAATTGGCACCAACGAGTAAAATCCCCTTGTGCTT 3061621 Query 24160 CAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTG 24219 | || ||||| ||||| | | ||| || | | | | |||||| || || || || | Sbjct 3061622 CCGGTCCCCATAGTAGCAACAAAGAGTGTGCTAAACTATTAGCAGGGGTGGAAACTGCCG 3061681 Query 24220 CCG-TAAGAAAGTTAGCACCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTC 24278 ||| ||||||| || ||| || | |||||||||||| | ||||||||| |||||| Sbjct 3061682 CCGTTAAGAAA-TTGCAACCTTCCAAATAGGAACTAGCCAATCCATGGGTATACCAAGAA 3061740 Query 24279 GTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAGTGGGAAGAAGT 24338 || ||||||| || || |||| |||||| || | || | ||||||| |||| || Sbjct 3061741 GTTACAAAAGTAGTCCCTGTAAACCAACCCCCTAAAGCGAAATAAGCACAAGGAAAGAGC 3061800 Query 24339 AGGAGTCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCAAGATG 24398 | || || ||||| || ||||| || || || |||| | | ||||||||||| || Sbjct 3061801 AATAGGCCGGACCATCCTACAAAAACGAAACGGTCCCTTCGTAACCAGTCGTCCATAATA 3061860 Query 24399 TCAAA 24403 ||||| Sbjct 3061861 TCAAA 3061865 >seq72 Length=1231634 Score = 183 bits (202), Expect = 4e-41 Identities = 209/278 (75%), Gaps = 2/278 (1%) Strand=Plus/Minus Query 23877 TTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACACCGAAACTCGGC 23936 |||||||| || |||| ||| || | ||| | || || || || || || ||||||| Sbjct 291405 TTATGAAATCCTTGGAAGAAAAGGATGAATCAAAATATAGCTGCTACGCCAGAACTCGGT 291346 Query 23937 GCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACACGAATACAGCA 23996 |||||||||||| || ||||||| ||||| || |||||||| || || || ||||| Sbjct 291345 GCAAAGAACCAACCAGATTGTCCCAGTGGATAAATAAGGAATACGGAAACAAAAACAGCG 291286 Query 23997 ATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGACGT-GCCAGTTC 24055 || |||||| | || | ||| ||||| || || || | | || |||| | || ||||| Sbjct 291285 ATTGGACCAAAGAATGAAATTGCATTATAAGGCCGCAATTGAA-CAGACCTAGCAAGTTC 291227 Query 24056 AAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCAACAAAGGACCA 24115 ||| ||||||||||| |||||||| |||||||| || || |||||||| ||||| | ||| Sbjct 291226 AAATTGACGTAACATGAAACCTATTAGTGCAAAAGCCCCATGGAGAGCGACAAAAGTCCA 291167 Query 24116 AAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTT 24153 || || || | |||| ||| || ||| ||||||| Sbjct 291166 CAGACCCCCTAATTGGCACCAACGAGTAAAATCCCCTT 291129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665489200825000