Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq58 122 1e-22 seq49 116 4e-21 seq23 109 7e-19 >seq58 Length=1564795 Score = 122 bits (134), Expect = 1e-22 Identities = 218/317 (69%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || ||||||||||| || ||| |||| ||| ||| || ||||| ||||| ||| Sbjct 1272984 GGAGCCAAGATCCCAAAGGGGTGCCTGCTCGTCGGTCCGCCTGGGACGGGTAAGACTCTC 1272925 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 ||||| || ||| |||| || || | || || ||| || ||| | || | | Sbjct 1272924 CTCGCGCGTGCCGTCGCCGGGGAGGCCGGCGTGCCGTTCTTCTCCTGCGCCGCGTCCGAG 1272865 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || ||| | || || ||||| |||||| ||||| | || ||||| || | ||| Sbjct 1272864 TTCGTCGAGCTCTTCGTCGGTGTCGGTGCCTCCAGGGTCAGGGACCTCTTCGAGAAGGCC 1272805 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 | || || || |||||||||||||||||||||||||| || |||| || || Sbjct 1272804 AAGGCCAAGGCGCCTTGCATTGTCTTCATTGATGAGATTGATGCCGTCGGCAGACAGCGT 1272745 Query 175516 AGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTC 175572 | ||||| |||| | ||| |||||||| || || || ||||| || || || Sbjct 1272744 GGTGCTGGGCTTGGT---GGTGGAAACGACGAGAGGGAGCAGACCATTAACCAGCTGCTG 1272688 Query 175573 ACCGAGATGGATGGCTT 175589 || |||||||| ||||| Sbjct 1272687 ACGGAGATGGACGGCTT 1272671 >seq49 Length=1823295 Score = 116 bits (128), Expect = 4e-21 Identities = 197/284 (69%), Gaps = 6/284 (2%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||||||||||||||||| ||||| ||||||| ||||| ||| ||| ||| Sbjct 586375 TTTGTGGAGATGTTTGTTGGTGTCGGTGCTTCCCGGGTTCGTGATCTTTTTAAAAAGGCC 586434 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| ||| || || || || ||||||| || ||||| || || | |||| | Sbjct 586435 AAGGAGAATGCACCTTGCATAGTGTTTGTTGATGAAATCGATGCTGTTGGAAGGCAAAGA 586494 Query 175516 AGCGCTGGT---GGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTC 175572 | | ||| ||| | |||||| || || || || || | |||||||| || Sbjct 586495 GGAACGGGTATCGGT---GGTGGAAATGATGAAAGGGAGCAGACCCTGAATCAACTTCTG 586551 Query 175573 ACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGC 175632 || ||||||||||| ||||| | ||||| || | |||||||| |||||||| | Sbjct 586552 ACTGAGATGGATGGTTTTGAGGGGAACACTGGAATCATTGTTATTGCTGCCACTAACAGA 586611 Query 175633 GTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 | ||||| | ||| || | ||| | || || || ||||| Sbjct 586612 GCTGATATTTTGGATTCTGCTTTACTTAGACCTGGACGCTTTGA 586655 >seq23 Length=2780208 Score = 109 bits (120), Expect = 7e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 |||||| |||||||| | ||||| || || || ||||| ||||||||||| || || || Sbjct 1222113 CTTCGCGGAGCGCCTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 1222054 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | |||||||| || |||||||| || || |||||| || || Sbjct 1222053 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGACTCACCTTCTCCAACGA 1221994 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || || || || ||||| || ||| Sbjct 1221993 GCTCATCTCGCGCGACGAGGGCCTGCAC 1221966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596564939300000