Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq15 598 5e-166 seq72 167 3e-36 >seq15 Length=3529114 Score = 598 bits (662), Expect = 5e-166 Identities = 741/1010 (73%), Gaps = 8/1010 (1%) Strand=Plus/Plus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || ||||| || ||||| || || ||||||| || |||||||| || | Sbjct 3060848 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCT 3060907 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || ||||| ||| ||||||| ||| || || || ||||| || || ||||||| Sbjct 3060908 GATCCTGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGA 3060967 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | ||||| || || || ||||| ||||| | ||| || ||||| || |||||||| |||| Sbjct 3060968 AAGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCAC 3061027 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | ||||| ||||| || |||| | || || | ||| |||| | ||| | || || | Sbjct 3061028 GTAGGTTCAGAGCCAGGCCAACTACGCCAATAGCACTCATCCATAAACCGGTGACGGGTA 3061087 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 |||| | |||||||||||| ||||| | |||||| ||| |||| ||||||||| || | Sbjct 3061088 CAAATAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGG 3061147 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 |||| |||||||| || || |||||||| |||||||||||| ||||||| | || || | Sbjct 3061148 ACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCCGCTTGAGTGGGGTTAAAAG 3061207 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 || ||| || ||||| ||||||||||| | ||||| || ||||| ||| | |||| Sbjct 3061208 CTCGGAAGGTATTTGCACCATCACCATCTTCGAATAGAGTGTTTTCTACAGTAGCCCCAT 3061267 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 |||| || | || | || |||| | | || || || |||||||||||||| |||| Sbjct 3061268 GAATAGCGCATAGGAGAGCTGCACCTAATACTCCGGCAACTCCCATCATATGAAAGGGGT 3061327 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125 |||| ||||| ||||| |||||||| | ||| || | ||||||||| || |||| || | Sbjct 3061328 TCAACGTCCAATTATGAAATCCTTGGAAGAAAAGGATGAATCGAAATATAGCTGCTACGC 3061387 Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185 | ||| || || || ||||||| ||||| ||||| || || || || || || || Sbjct 3061388 CAAAACTCGGTGCAAAGAACCAACCAGATTGTCCCAGTGGATAAATAAGGAATACGGAAA 3061447 Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGAC 67245 ||||||||||||| ||||||||||| | ||| ||||| || || || | | || |||| Sbjct 3061448 CAAAAACAGCGATTGGACCAGAGAATGAAATTGCATTATAAGGCCGCA-ATTGAACAGAC 3061506 Query 67246 GT-GCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGCC 67304 | || |||||||| || || | ||||||||| ||||| || |||||||| ||||| || Sbjct 3061507 CTAGCAAGTTCAAATTGACGTAACATGAAACCTATTAGTGCAAAAGCCCCATGGAGAGCG 3061566 Query 67305 ACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGGA 67364 |||||| |||| || || || | |||| ||| || |||||||| || | || || Sbjct 3061567 ACAAAAGTCCACAGACCCCCTAATTGGCACCAACGAGTAAAATCCCCTTGTGCTTCCGGT 3061626 Query 67365 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGTG 67424 ||||| ||||| | | ||| || | | | || |||||| || || || ||||| || Sbjct 3061627 CCCCATAGTAGCAACAAAGAGTGTGCTAAACTATTAGCAGGGGTGGAAACTGCCGCCGTT 3061686 Query 67425 AGAAAATTAGCACCCTCAAGAT---AACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTG 67481 | ||||| ||| || | || ||||| || | ||| || || ||||| || Sbjct 3061687 AAGAAATTGCAACCTTCCAAATAGGAACTA---GCCAATCCATGGGTATACCAAGAAGTT 3061743 Query 67482 ACAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGT 67541 ||||| ||||| || |||| ||| || || | || | ||||||| ||||| || | | Sbjct 3061744 ACAAAAGTAGTCCCTGTAAACCAACCCCCTAAAGCGAAATAAGCACAAGGAAAGAGCAAT 3061803 Query 67542 AGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATC 67591 || || ||||| || ||||| || || || || | | | |||||| || Sbjct 3061804 AGGCCGGACCATCCTACAAAAACGAAACGGTCCCTTCGTAACCAGTCGTC 3061853 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| ||||||||||||| ||| ||||||| ||| || Sbjct 3081296 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAGTCGGTTAACAGCCGACCGC 3081353 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 3081354 TCTACCACTGAGCTACTGAGGA 3081375 >seq72 Length=1231634 Score = 167 bits (184), Expect = 3e-36 Identities = 212/289 (73%), Gaps = 2/289 (1%) Strand=Plus/Minus Query 67064 GTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGAC 67123 |||||| | | ||||| |||||||| | ||| || | ||||| ||| || |||| || Sbjct 291418 GTTCAAAATAGAATTATGAAATCCTTGGAAGAAAAGGATGAATCAAAATATAGCTGCTAC 291359 Query 67124 CCCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACT 67183 || || || || || ||||||| ||||| ||||| || || || || || || Sbjct 291358 GCCAGAACTCGGTGCAAAGAACCAACCAGATTGTCCCAGTGGATAAATAAGGAATACGGA 291299 Query 67184 AACAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAG 67243 ||||||||||||||| |||||| |||| | ||| ||||| || || || | | || || Sbjct 291298 AACAAAAACAGCGATTGGACCAAAGAATGAAATTGCATTATAAGGCCGCA-ATTGAACAG 291240 Query 67244 ACGT-GCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCG 67302 || | || |||||||| || || | ||||||||| ||||| || |||||||| ||||| | Sbjct 291239 ACCTAGCAAGTTCAAATTGACGTAACATGAAACCTATTAGTGCAAAAGCCCCATGGAGAG 291180 Query 67303 CCACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCC 67351 | |||||| |||| || || || | |||| ||| || |||||||| Sbjct 291179 CGACAAAAGTCCACAGACCCCCTAATTGGCACCAACGAGTAAAATCCCC 291131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572049930825000