Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq57 95.1 2e-14 >seq57 Length=1649376 Score = 95.1 bits (104), Expect = 2e-14 Identities = 168/244 (69%), Gaps = 1/244 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| || || || | || | || | ||||| ||| || || || ||||| Sbjct 1449651 ATGCCACCCCTCAGACGCAGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCA 1449592 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | || | || || | || || ||||||||||| | ||||| || || || Sbjct 1449591 GCCAATGTACGGCCATCTTCTAGCTGCTTGCCAGCAAAAATGAGCCTCTGCTGATCTGGG 1449532 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || ||||| || || || || |||||| |||||||| || | ||| Sbjct 1449531 GGGATGCCCTCCTTATCCTGAATCTTGGCCTTAACATTATCAATAGTATCCGAAGTCTCT 1449472 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT-TTTATTATA 172078 || || ||||| ||||| || ||||| || || || | ||| |||||||| | | ||||| Sbjct 1449471 ACCTCAAGAGTGATGGTCTTGCCAGTCAACGTCTTGACGAAGATCTGCATCTGTGTTATA 1449412 Query 172079 AAAA 172082 ||| Sbjct 1449411 TAAA 1449408 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| ||||| | || | ||| | || |||| || || |||||||| || | ||| Sbjct 1450287 ATATTGTAATCAGCCAATGTGCGTCCATCCTCCAGCTGCTTTCCAGCAAATATAAGCCTC 1450228 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||||||||| || ||||| || ||||| || || || |||||| || || Sbjct 1450227 TGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTCACATTATCAATGGTG 1450168 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || || || || ||||| ||||| || ||||| | || || | || |||||| Sbjct 1450167 TCAGAGCTCTCAACCTCAAGAGTTATGGTCTTTCCAGTGAGCGTCTTCACAAAGATCTGC 1450108 Query 172068 AT 172069 || Sbjct 1450107 AT 1450106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905128928625000