Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq80 161 3e-34 seq49 113 1e-19 seq46 104 7e-17 seq11 100 8e-16 seq12 98.7 3e-15 seq55 93.3 1e-13 seq33 93.3 1e-13 seq69 91.5 4e-13 seq22 89.7 2e-12 >seq80 Length=928440 Score = 161 bits (178), Expect = 3e-34 Identities = 239/339 (71%), Gaps = 0/339 (0%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||||||||| || |||||| || ||| ||||| |||||| || | | | || Sbjct 58427 ATTTCTTACAGTACCATCATATTTAACCATGATGTCCTCCATAGCTTTCACAAGCCTCCG 58486 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||| ||||| ||||| || ||||| |||||||||||||| | | |||||| Sbjct 58487 CTGGATATACCCAGTCTCTGATGTCTTCACAGCAGTATCAATTAGACCTTCCCTACCACC 58546 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||||||||| | ||| | ||| ||||| | || | ||| |||| || || Sbjct 58547 CATAGCATGGAAGAAAAACTCCTGTGGTGTCAGCCCTCGAAGGTAAGAGTTCTCCACAAA 58606 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777 ||||| ||| || || ||| || || || ||||| || || | || | Sbjct 58607 TCCACGACTCTCAGGACCATAGTCATCTTTTGTGAAATGTGGTAGTGTACGGTCAATGAA 58666 Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGA 302837 ||| |||||||||||||||| ||||| ||||||||||| | || | | |||| || || Sbjct 58667 ACCGAATGGGATACGCTTTCCCTCAACATTCTGCTGTCCGACACAAGCAGTCATTTGTGA 58726 Query 302838 AATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 ||| || | |||||| || || || ||| | ||||| Sbjct 58727 AATGTTAATGAAACTGCCTTTTGAACCTGCAGTAACCAT 58765 >seq49 Length=1823295 Score = 113 bits (124), Expect = 1e-19 Identities = 343/512 (67%), Gaps = 20/512 (4%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 || ||||| | |||| | | ||| || | || || ||||| |||||||| || || Sbjct 586658 CTGTCAAAGCGTCCAGGTCTAAGTAAAGCAGAATCCAAAATATCAGCTCTGTTAGTGGCA 586599 Query 288910 GCCAATACAACAATAGATTCG---GTTTGCTT-AAATCCATCCATACTTGTTAAAATTTG 288965 || |||| ||||| ||||| ||| | | ||| |||||||| || | || ||| Sbjct 586598 GC-AATA--ACAAT-GATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGAAGTTG 586543 Query 288966 ATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttt 289025 ||| || || || ||||||||||||||| ||| | || ||||| | || |||| Sbjct 586542 ATTCAGGGTCTGCTCCCTTTCATCATTTCCACCAC-CGA--TACCCG--TTCCT-CTTTG 586489 Query 289026 tttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085 | ||||||||||| ||||| |||| || | | || || | ||| | | || | Sbjct 586488 CCTTCCAACAGCATCGATTTCATCAACAAACACTATGCAAGGTGCATTCTCCTTGGCCTT 586429 Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 | ||| | || | || ||||| || || | ||||||| |||| || ||||| ||||| Sbjct 586428 TTTAAAAAGATCACGAACCCGGGAAGCACCGACACCAACAAACATCTCCACAAACTCAGA 586369 Query 289146 AGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 | |||| |||| | ||| | || ||||| ||||| | |||| | || || | | Sbjct 586368 TCCCGATA-TTGAGAAGAAAGGCACTCCAGCTTCTCCTGCAATTGCCTTGGCGAGCAAAG 586310 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAG 289264 ||||||| || || || || || | | ||||| ||||| || | || ||| ||| Sbjct 586309 TCTTACCCGTCCCGGGAGGACCAACAAGAAGAACACCCTTAGGAATGCGAGCACCAACAG 586250 Query 289265 ACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCC-TCAAGTTCATATTTTGCC 289323 | | | || || |||| || ||||| |||| ||| | ||| || | || ||| Sbjct 586249 CAGTGAACCTTTCTGGTTTCTTCAAGAATTCAACAACCTCCATGAAG-TCTTGCTTCGCC 586191 Query 289324 TCATC-ACATCCTGCTACATCAGCAAAAGTAA 289354 ||||| ||| || || ||||| | || |||| Sbjct 586190 TCATCGACA-CCAGCAACATCGTCGAATGTAA 586160 >seq46 Length=1857289 Score = 104 bits (114), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 156040 TAGCAAAAC-TACCATTCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATTG 156095 ||| | ||| |||| || || ||||| ||| ||||| ||||| |||||||| | |||| Sbjct 1671558 TAGTAGAACATACCTTTTCTTTTGCCGCCACCTTGATCAACATAACGAGCAGTATCATTG 1671499 Query 156096 AAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAA 156155 ||||||| || |||||||| ||| ||||| || || ||||| ||||| | ||||| | Sbjct 1671498 AAGACACGTAACATAGGAACAATCCCATTTGAGGTTCCATTTGTTCCCCTAATATAGCTA 1671439 Query 156156 CCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGA 156215 |||| | || | ||| |||| | | ||||| || |||| | || || | Sbjct 1671438 CCAGTAGCTCGGATATTGTGAACAGAGACACCAATTCCCCCTGCAGACTTGCTTATGACA 1671379 Query 156216 GCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 || |||||||| | ||||| | || || ||||| ||||||| ||| Sbjct 1671378 GCACATTCCTTCAGAGTATCATAGATTCCCTCAATGCTGTCATCTTTCAT 1671329 >seq11 Length=3891467 Score = 100 bits (110), Expect = 8e-16 Identities = 207/303 (68%), Gaps = 14/303 (5%) Strand=Plus/Plus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 ||||| || ||||| || | ||| |||||||| ||||| |||||| |||| | ||| Sbjct 2416368 GCGATGAGGCCACATTTCTCACATACATGGACTCTGTATGCATCACTCTGGTCAAACAGC 2416427 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 | |||| ||| | || || |||| ||||||||| || | |||||| || || Sbjct 2416428 CTTTCCTTCAGGAAAAATGCGGCTCCATGTGCAATCATACAGTCCCTCTCCATCTCTCCA 2416487 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAG-AT-TAACCA 251581 ||||||||||||||||| || | | ||||| || || || || ||||| || | | || Sbjct 2416488 AAACGAAGACCACCATCACGTGAGCGCCCCTCTGCTGGTTGCCGGGTGAGTATCTGAACA 2416547 Query 251582 ----TAGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGG 251637 | |||| | || |||| ||| || | ||||| |||||||| | ||| Sbjct 2416548 GGGCCACGACCTCTTGA------ATGTATCTTGTCGTCCACCATGTGCTTGAGTCTTTGG 2416601 Query 251638 TAGAATGCGGGACCGATGAAGATGCTCGAAGGC-ATTTGCTCTCCAGTTAGAGCGTTATA 251696 || | | |||||| | ||| || | | || | |||| || |||||| || | || || Sbjct 2416602 TAATACGTGGGACCCAGGAAAATCATTGCAGTCAATTTTCT-TCCAGTGTGACCATTGTA 2416660 Query 251697 CAT 251699 ||| Sbjct 2416661 CAT 2416663 >seq12 Length=3772834 Score = 98.7 bits (108), Expect = 3e-15 Identities = 154/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 156049 TACCATTCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| || |||||||| ||| ||||| ||||| || ||||| | |||||| |||| || Sbjct 2780935 TACCTTTTCTCTTGCCTCCACCTTGATCAACATAACGTGCAGTATCATTGAAAACACGTA 2780876 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 ||||||||| || || || ||||| ||||| ||||| || |||| |||| | | Sbjct 2780875 GCATAGGAACAAGTCCGTTAGAAGTCCCATTAGTTCCTCGGATATAACTTCCAGTAGCTC 2780816 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 ||| ||||||||| | || || || || | ||| || ||| |||||| Sbjct 2780815 GAATATTATGAATTGAGATACCGATTCCTCCAGCAGTTTTGCTTATCGCAGCACATTCCG 2780756 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 | ||||| |||| || |||||| |||||||| ||| Sbjct 2780755 AAAGAGTATCATAAATTCCCTCAATACTATCATCTTTCAT 2780716 >seq55 Length=1724501 Score = 93.3 bits (102), Expect = 1e-13 Identities = 213/311 (68%), Gaps = 11/311 (4%) Strand=Plus/Plus Query 289038 ATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC--AAATAAT 289095 |||||| || |||||||| | | || || | || ||||| || || | |||||| Sbjct 1716227 ATCAATCTCATCAATGAATACAATACTTGGTGCATATTGTCGAGC--TTCCTGAAATAAG 1716284 Query 289096 TCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACT 289155 || || | ||| | ||||| ||||||| |||| || | || || ||| | || | | Sbjct 1716285 CTTCGCACCCTGGACGGTCCAACACCAACAAACATCTCCATGAAGTCCGAACCAGAAA-T 1716343 Query 289156 TGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGT 289214 || | ||| | ||| | ||| ||||| || | || || ||||| || || || Sbjct 1716344 AGACAAGAAGGGAACACCAGATTCTCCTGCGGTAGCTTTAGCAAGGAGTGTTTTCCCCGT 1716403 Query 289215 TCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA-CTT-ATAT 289272 ||||| || ||| | | ||| | |||||||||| ||| || || ||| ||| |||| Sbjct 1716404 ACCAGGGGGGCCCACAAGAAGAGCACCCTTTGGTATTTTAGCTCC--CAGTTCTTCATAT 1716461 Query 289273 TTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACAT 289332 |||| ||| | || | ||| | ||||| |||| | ||| |||||||||||| || Sbjct 1716462 TTCTT-GGGATTTTCAGAAAGTGTACAAATTCCATTATTTCTAGTTTTGCCTCATCGCAG 1716520 Query 289333 CCTGCTACATC 289343 || |||||||| Sbjct 1716521 CCAGCTACATC 1716531 >seq33 Length=2354306 Score = 93.3 bits (102), Expect = 1e-13 Identities = 213/311 (68%), Gaps = 11/311 (4%) Strand=Plus/Plus Query 289038 ATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC--AAATAAT 289095 |||||| || |||||||| | | || || | || ||||| || || | |||||| Sbjct 11056 ATCAATCTCATCAATGAATACAATACTTGGTGCATATTGTCGAGC--TTCCTGAAATAAG 11113 Query 289096 TCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACT 289155 || || | ||| | ||||| ||||||| |||| || | || || ||| | || | | Sbjct 11114 CTTCGCACCCTGGACGGTCCAACACCAACAAACATCTCCATGAAGTCCGAACCAGAAA-T 11172 Query 289156 TGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGT 289214 || | ||| | ||| | ||| ||||| || | || || ||||| || || || Sbjct 11173 AGACAAGAAGGGAACACCAGATTCTCCTGCGGTAGCTTTAGCAAGGAGTGTTTTCCCCGT 11232 Query 289215 TCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA-CTT-ATAT 289272 ||||| || ||| | | ||| | |||||||||| ||| || || ||| ||| |||| Sbjct 11233 ACCAGGGGGGCCCACAAGAAGAGCACCCTTTGGTATTTTAGCTCC--CAGTTCTTCATAT 11290 Query 289273 TTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACAT 289332 |||| ||| | || | ||| | ||||| |||| | ||| |||||||||||| || Sbjct 11291 TTCTT-GGGATTTTCAGAAAGTGTACAAATTCCATTATTTCTAGTTTTGCCTCATCGCAG 11349 Query 289333 CCTGCTACATC 289343 || |||||||| Sbjct 11350 CCAGCTACATC 11360 >seq69 Length=1288172 Score = 91.5 bits (100), Expect = 4e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 408951 TAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGAGTCCCACA 409010 || ||||||||||||||| || |||||||||||||||| |||| ||||||||| ||| | Sbjct 1205914 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 1205973 Query 409011 TAGAACAtttttttAAAGTT 409030 || |||||||||||| || Sbjct 1205974 GGGACCATTTTTTTAAAATT 1205993 >seq22 Length=2792836 Score = 89.7 bits (98), Expect = 2e-12 Identities = 225/341 (66%), Gaps = 1/341 (0%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||||||||| || |||||| | ||| || || ||||||| || | | | || Sbjct 2325632 ATTTCTTACAGTACCATCATATTGCACCATGATATCCTCCATACATTTCACAAGTCTGCG 2325691 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||||||||| ||| | ||| || ||| |||| |||| ||| | | | | |||||||| Sbjct 2325692 CTGAATATA-CCAATCTCAGAAGTCTTTGCAGCAGTATAAATCAAAGCTTCTCGACCACC 2325750 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| ||||| | |||| || || || | | | | ||| |||| || || Sbjct 2325751 CATAGCATGAAAGAAAAATTCTTGTGGAGTGAGTCCTCGGAGATAAGAGTTCTCCACAAA 2325810 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777 ||||| || || | ||| || |||| ||||||| || | || | Sbjct 2325811 TCCACGACTTTCAGGGCCGTAGTCACCTTTTCTAAAATGTGGCAATGTTCGGTCAATGAA 2325870 Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGA 302837 || |||| || | |||||| ||||| ||||||||||| | || | ||| || || Sbjct 2325871 ACCAAATGGTATCCTCTTTCCCTCAACATTCTGCTGTCCGACACATGCAATAGCTTGTGA 2325930 Query 302838 AATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATAA 302878 ||| || | || ||| || || || ||| | ||||||| Sbjct 2325931 AATGTTAAGGAAACAGCCTTTAGAACCTGCAGTGACCATAA 2325971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471805813960625