Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq15 592 2e-164 seq72 170 2e-37 >seq15 Length=3529114 Score = 592 bits (656), Expect = 2e-164 Identities = 737/1007 (73%), Gaps = 2/1007 (0%) Strand=Plus/Minus Query 159306 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTT 159365 || |||||| | | | || || || |||||||| || ||||| || ||| | || || Sbjct 3061853 GACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGCCTATTGCTCTTT 3061794 Query 159366 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 159425 || ||||||| | || | || |||||| |||| || || ||||||| || |||| Sbjct 3061793 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTTGG 3061734 Query 159426 TACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCAGCTGTC 159485 || ||||| || | |||||||||||| | || ||| || || | || || || || Sbjct 3061733 TATACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGCAATTTCTTAACGGCGGCAGTT 3061674 Query 159486 TCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 159545 || || |||||| | | | | || ||| | | ||||| ||||| || || | || Sbjct 3061673 TCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACCGGAAGCACAA 3061614 Query 159546 GGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGGT 159605 ||| |||| || ||||||||| | ||||| | |||| |||||| || ||||| || Sbjct 3061613 GGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTCGCTCTCCATGGG 3061554 Query 159606 GCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGC-ACGTCTCATTGGTAT 159664 || || || ||||| ||||||||| | ||||| |||||||| || | |||| | | | Sbjct 3061553 GCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGGTCTGTTCAAT-T 3061495 Query 159665 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCT 159724 || ||||| ||||| ||| | ||||||||||| || ||||||||||| ||| ||||| Sbjct 3061494 GCGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCTGTTTTTGTTTCCGTATTCCT 3061435 Query 159725 CATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAAT 159784 || || ||| |||| || || ||||||| || || ||| ||||| || ||||| || Sbjct 3061434 TATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGCAGCTAT 3061375 Query 159785 CTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATAT 159844 ||| ||||| | | ||| | ||||||||||| || |||||||| || ||||| ||||| Sbjct 3061374 ATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCCTTTCATAT 3061315 Query 159845 GATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGT 159904 |||||||||||| || || |||||| ||| || || | || || ||||| | |||||| Sbjct 3061314 GATGGGAGTTGCCGGAGTATTAGGTGCAGCTCTCCTATGCGCTATTCATGGGGCTACTGT 3061255 Query 159905 AGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAAC 159964 ||| ||||| || | |||||||| || ||||||||||| || ||| | | || Sbjct 3061254 AGAAAACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCGAGCTTTTAACCCCAC 3061195 Query 159965 TCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 160024 ||||| ||| || ||||| || |||||||| || |||||||| ||||| || ||||| || Sbjct 3061194 TCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGG 3061135 Query 160025 TATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGG 160084 | |||| ||||| || || || ||| | |||||||| ||| | ||||| || || | || Sbjct 3061134 TGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGG 3061075 Query 160085 TCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTT 160144 | | |||| |||||||| | ||||||| ||||| || || ||||| || || || Sbjct 3061074 TTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGACTT 3061015 Query 160145 CGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAA 160204 ||| || || ||| | ||||| |||||||| ||||||||||| |||||||||||||| Sbjct 3061014 CGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAA 3060955 Query 160205 CATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAAA 160264 || || || ||||| || | ||||| ||| ||||| || ||||| || |||||||| Sbjct 3060954 TATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAA 3060895 Query 160265 CTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 160311 |||| ||||| || || || | || | || ||||| ||||||| Sbjct 3060894 TCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 3060848 >seq72 Length=1231634 Score = 170 bits (188), Expect = 2e-37 Identities = 207/278 (74%), Gaps = 3/278 (1%) Strand=Plus/Plus Query 159544 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACG 159603 |||||| ||| | || ||||||||| | ||||| | |||| |||||| || ||||| | Sbjct 291130 AGGGGATTTTACT-CGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTCGCTCTCCATG 291188 Query 159604 GTGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGC-ACGTCTCATTGGT 159662 | || || || ||||| ||||||||| | ||||| |||||||| || | |||| | | Sbjct 291189 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGGTCTGTTCAAT 291248 Query 159663 ATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTC 159722 | || ||||| ||||| ||| | |||| |||||| || ||||||||||| ||| ||| Sbjct 291249 -TGCGGCCTTATAATGCAATTTCATTCTTTGGTCCAATCGCTGTTTTTGTTTCCGTATTC 291307 Query 159723 CTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCA 159782 || || || ||| |||| || || ||||||| || || ||| | ||| || ||||| Sbjct 291308 CTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTCTGGCGTAGCAGCT 291367 Query 159783 ATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAA 159820 || ||| ||||| | | ||| | ||||||||||| || Sbjct 291368 ATATTTTGATTCATCCTTTTCTTCCAAGGATTTCATAA 291405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548370115825000