Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq15 646 1e-180 seq72 158 1e-33 >seq15 Length=3529114 Score = 646 bits (716), Expect = 1e-180 Identities = 759/1017 (75%), Gaps = 8/1017 (1%) Strand=Plus/Minus Query 152359 TTTGATGTCCTGGATGACTGGCTTAAGA-GAGACCGTTTCGTTTTTGTTGGTTGGTCTGG 152417 |||||| | |||| |||||| ||| || | ||||||||||||||||| || ||||| || Sbjct 3061865 TTTGATATTATGGACGACTGG-TTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGG 3061807 Query 152418 ACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTT 152477 || | || ||||| ||||||| | ||| | || |||||| |||| ||||||||||| Sbjct 3061806 CCTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTT 3061747 Query 152478 CGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGC-GCAAACTTTC 152536 | || ||||||||| || || ||||| ||||||||| |||| || |||| |||| Sbjct 3061746 TGTAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGCAA--TTTC 3061689 Query 152537 TTA-CTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGG 152595 ||| | ||||||||||| || || || || | | | || ||| | |||| || ||| Sbjct 3061688 TTAACGGCGGCAGTTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGG 3061629 Query 152596 GGTCCTGAGGCTCAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTTT 152655 || || || || ||||||||||| | ||| || | || || || ||| ||||| Sbjct 3061628 GGACCGGAAGCACAAGGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTT 3061569 Query 152656 GTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGGC- 152714 || || ||||| |||||||| || ||||| ||||||||| | || || |||||||| || Sbjct 3061568 GTCGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCT 3061509 Query 152715 ACGTCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTT 152774 | |||| || | | || || || ||||| ||| | ||||||||||| ||||||||||| Sbjct 3061508 AGGTCTGTTCAAT-TGCGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCTGTTTT 3061450 Query 152775 TGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTT 152834 |||| ||| || || || || || ||||| ||||| ||||||| || || || ||| Sbjct 3061449 TGTTTCCGTATTCCTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTT 3061390 Query 152835 CGGGGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATT 152894 || || ||||| || || |||||| | || ||| | |||||||| || || ||||| || Sbjct 3061389 TGGCGTAGCAGCTATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTT 3061330 Query 152895 GAATCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCAT 152954 ||| || |||||||||||||| ||||| || | || || | || | || | || || Sbjct 3061329 GAACCCCTTTCATATGATGGGAGTTGCCGGAGTATTAGGTGCAGCTCTCCTATGCGCTAT 3061270 Query 152955 TCATGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTTTCAA 153014 |||||| | ||| ||||| || ||| | | |||||||||| ||||| || ||| Sbjct 3061269 TCATGGGGCTACTGTAGAAAACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCG 3061210 Query 153015 AGCTTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTG 153074 |||||| || |||||||| ||||| || ||||| ||||| || |||||||| || || Sbjct 3061209 AGCTTTTAACCCCACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTG 3061150 Query 153075 GTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTT 153134 |||||| || ||||| |||||||| ||||||||| ||| | |||||||||||||| || Sbjct 3061149 GTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATT 3061090 Query 153135 TGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCT 153194 |||||| || | ||| | |||| | ||||||| | |||| || ||||| || || Sbjct 3061089 TGTACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCT 3061030 Query 153195 TCGTGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGAC 153254 ||||| || || || || || || |||||| | || | |||||||||||||||||||| Sbjct 3061029 ACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGAC 3060970 Query 153255 GTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTGTTGA 153314 ||||| || || ||||| ||||| ||||| ||| ||||||| ||| ||||| || || Sbjct 3060969 TTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGA 3060910 Query 153315 CCAACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCTCT 153371 || |||||||| || | | |||||||| ||||| | ||||| || |||||||| Sbjct 3060909 TCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 3060853 >seq72 Length=1231634 Score = 158 bits (174), Expect = 1e-33 Identities = 186/249 (75%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 152638 GGAGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTT 152697 || || || ||| ||||||| || ||||| |||||||| || ||||| ||||||||| | Sbjct 291158 GGGGGTCTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTA 291217 Query 152698 CGCCAGTTTGAACTGGC-ACGTCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTC 152756 || || |||||||| || | |||| || | | || || || ||||| ||| | |||| Sbjct 291218 CGTCAATTTGAACTTGCTAGGTCTGTTCAAT-TGCGGCCTTATAATGCAATTTCATTCTT 291276 Query 152757 TGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTG 152816 |||||| ||||||||||||||| ||| || || || || || ||||| ||||| |||| Sbjct 291277 TGGTCCAATCGCTGTTTTTGTTTCCGTATTCCTTATTTATCCACTGGGACAATCTGGTTG 291336 Query 152817 GTTTTTCGCTCCATCTTTCGGGGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGG 152876 ||| || || || || || || ||||| || || ||||| | || ||| | ||||| Sbjct 291337 GTTCTTTGCACCGAGTTCTGGCGTAGCAGCTATATTTTGATTCATCCTTTTCTTCCAAGG 291396 Query 152877 ATTCCACAA 152885 ||| || || Sbjct 291397 ATTTCATAA 291405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549618106075000