Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq23 224 2e-52 seq57 183 5e-40 seq14 183 5e-40 seq55 161 2e-33 seq3 161 2e-33 seq1 156 7e-32 seq61 122 1e-21 seq95 96.9 5e-14 seq66 87.8 3e-11 >seq23 Length=2780208 Score = 224 bits (248), Expect = 2e-52 Identities = 244/324 (75%), Gaps = 6/324 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || |||||||| ||| | |||||| ||| ||| || |||||||||||||||||| Sbjct 1221973 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGTCCCGGCATGAGGCCGCGCTTC 1222032 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| |||||||| ||||| ||||||||| ||||||||||||||| ||| || Sbjct 1222033 TTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAGGCGAAC 1222092 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 ||||||| ||||| || || || ||| || |||||| ||| |||||| Sbjct 1222093 GCGACGAGGCGCTCCGCGAAGCGCTCGCCGCC------GTCGATCCAGCGCATGGCCCAC 1222146 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 || ||||| | ||| | ||| ||||| ||||||||||| || ||| |||||||||| Sbjct 1222147 TCGGCCTTGCGGCGCACGGCGGGAACCGTCTCGATGGCGCGGAACAGGCGGTCCTTCTCC 1222206 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 | ||| || ||| || || | || |||||||| |||| ||||||||||| ||| Sbjct 1222207 GCGCCGTCGCGGATGTACGTCTCCAGCAGCAGCGAGTACATCTCCGAGTGGATGTTCTCG 1222266 Query 794641 ATGGCGATCTGGAAGCCATAAAAG 794664 |||||||||||||| || |||||| Sbjct 1222267 ATGGCGATCTGGAACCCGTAAAAG 1222290 Score = 192 bits (212), Expect = 9e-43 Identities = 232/311 (75%), Gaps = 6/311 (2%) Strand=Plus/Plus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 |||||||| |||||| |||||| || ||||||||||||| || ||||| | ||||||| Sbjct 1221667 TACTCGCCGACGCGCTTCTCGAAGAAATTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 1221726 Query 793968 CACGGGAACGGGTTGGC--CGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGC 794025 || |||||||||| | ||| ||| ||||| | || |||| | ||||||| Sbjct 1221727 CAGTCGAACGGGTTGACGACGTT--GTATATCTTCTTGTGTCCCAGCGCCATGAGCAGGC 1221784 Query 794026 GGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCA 794085 ||||||||||||| || |||||||||| |||||| || |||||||||||| |||||| Sbjct 1221785 GGTCGGCGACGAACTCGATGTACTGGCTCATGAGCACGCCGTTCATGCCGACGAGCGCGC 1221844 Query 794086 CGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCC 794145 ||| |||| |||| ||| ||||| |||||| |||||||| ||| || ||||| | Sbjct 1221845 AGGGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCT-CG 1221903 Query 794146 TGGGCACGTCGGACGACG-GCTTGTCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCG 794204 || | || || || ||||| | ||| | |||||| |||||||| |||||| Sbjct 1221904 CGGACGCGGGCCTCGTCGAGCTTGGAGCGGAGGAGGTCGTAGAGTAGGCAGGCGAAGTCG 1221963 Query 794205 CAATGCAGACC 794215 || ||||| || Sbjct 1221964 CAGTGCAGGCC 1221974 Score = 168 bits (186), Expect = 1e-35 Identities = 177/232 (76%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| || ||||| ||| |||||||||| || |||||||| |||||||||| Sbjct 1222297 GCCTCGGCGACCTGGACGTCCGACATGAAGCGGGACGCGAGGTTCTCCAGCACGATGCCG 1222356 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG- 796268 ||| ||||||||| ||||| || ||||| ||| || || ||||||||| | |||| Sbjct 1222357 TCGGAGGCGGCGAAGAAGGCCAGCACGTGGGAGATGAAATGGCGCTCGTCGGGGTTGAGG 1222416 Query 796269 --CGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 | | |||||||| || |||||| |||||| ||||||||||||||||| |||||| Sbjct 1222417 GCGGCGTCCCAGTGGCGCGCGTCGGCAGAGAGGTCCACCTCCTCGGCGGTCCAGAAGGAG 1222476 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 || | ||||| ||||| | |||||| ||| | |||| ||| ||||||| Sbjct 1222477 GCTACCGCCTTCTTGTAAAACTCCCAGATCTGCGGGTACTTGATCGGGAACA 1222528 >seq57 Length=1649376 Score = 183 bits (202), Expect = 5e-40 Identities = 184/239 (77%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||||||||||||||| ||||| |||||||||||| |||| || |||||| | | Sbjct 946823 TGAACTTGGTGACGGCCTTGGTCCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGA 946882 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||| |||| ||||||||||||||||| | ||| ||| |||||| || Sbjct 946883 GGACGAGGCGGACGGAGGTCTGGATCTCGCGGGAGGTGATGGTGGGCTTCTTGTTGTAGC 946942 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || | |||||||| | ||| |||| |||||||||| || ||||||| Sbjct 946943 GGGCGAGCTTGGCGGCCTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCA 947002 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 |||| ||||| | ||| |||||| || | |||||||||||||||||| | ||||||| Sbjct 947003 TGATGGACATGGCCTTGGAGGAGATTCCGATGTCGGGGTGCACCTGCTTCAACACCTTG 947061 >seq14 Length=3622118 Score = 183 bits (202), Expect = 5e-40 Identities = 184/239 (77%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||||||||||||||| || ||||| |||||||||||| |||| || |||||| | | Sbjct 1887045 TGAACTTGGTGACGGCCTTTGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGA 1886986 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||| || | ||||||||||||||||| | ||| ||| |||||| || Sbjct 1886985 GGACGAGGCGGACCGAGGTCTGGATCTCGCGGGAGGTGATGGTGGGCTTCTTGTTGTAGC 1886926 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||| || | |||||||| | ||| |||| |||||||||| || ||||||| Sbjct 1886925 GCGCGAGCTTGGCGGCCTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCA 1886866 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 |||| ||||| | ||| ||||||||| | ||||||||| |||||||| ||||||||| Sbjct 1886865 TGATGGACATGGCCTTGGAGGAGATGCCGATGTCGGGGTGGACCTGCTTCAGCACCTTG 1886807 Score = 156 bits (172), Expect = 7e-32 Identities = 178/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||||||||| |||||||||||||| |||||||||||| |||| || ||||| | | Sbjct 1856326 TGAACTTGGTGACCGCCTTGGTACCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCTGGAA 1856385 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||| || | |||||||||||| || | | ||| || ||||||| || Sbjct 1856386 GGACGAGGCGGACCGAGGTCTGGATCTCACGAGAGGTGATGGTAGGCTTCTTGTTATAGC 1856445 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||| || | | |||||| | ||| |||| |||||||||| || ||||||| Sbjct 1856446 GCGCGAGCTTGGCAGCCTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCA 1856505 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 |||| ||||| | ||| |||||| || | ||||||||| |||||||| | |||||| Sbjct 1856506 TGATGGACATGGCCTTGGAGGAGATACCGATGTCGGGGTGGACCTGCTTCAATACCTTG 1856564 >seq55 Length=1724501 Score = 161 bits (178), Expect = 2e-33 Identities = 176/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 |||||||| |||||||| ||||| ||||| |||||| |||| || ||||| | | || Sbjct 1552648 TTGGTGACAGCCTTGGTGCCCTCAGAGACCGCGTGCTTGGCGAGCTCGCCTGGGAGGACG 1552707 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCC 1485594 |||||||| | ||||||||||||||||| | || ||| |||||| ||| || Sbjct 1552708 AGGCGCACCGAGGTCTGGATCTCGCGGGAGGTAATGGTGGGCTTCTTGTTGTAGCGGGCG 1552767 Query 1485595 AGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATC 1485654 || | |||||||| | ||| || | |||||||||| |||||||||||||| Sbjct 1552768 AGCTTGGCGGCCTCGCCGGCGAGCTTCTCAAAGATGTCGTTGATGAACGAGTTCATGATG 1552827 Query 1485655 GACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| | ||| |||||| || | ||| ||||| |||||||||||||||||| Sbjct 1552828 GACATGGCCTTGGAGGAGATCCCGATGTCCGGGTGGACCTGCTTGAGCACCTTG 1552881 >seq3 Length=7343539 Score = 161 bits (178), Expect = 2e-33 Identities = 179/239 (75%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| ||||||||||| ||||| |||||||||||| |||| || |||||| | | Sbjct 1345863 TGAACTTGGTTACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGA 1345922 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || |||||||| | |||||| |||||||| | ||| ||| |||||| | Sbjct 1345923 GGACAAGGCGCACCGAGGTCTGAATCTCGCGCGACGTGATGGTGGGCTTCTTGTTGTACC 1345982 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||| | ||||| | ||| |||| |||||||||| || ||||||| Sbjct 1345983 TCGCCAGGCGCGCCGCCTCCTGGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCA 1346042 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 |||| ||||| | || |||||| || | ||| || ||||||||||||||||||||| Sbjct 1346043 TGATGGACATGGCCTTCGAGGAGATACCAATGTCCGGATGCACCTGCTTGAGCACCTTG 1346101 >seq1 Length=7984747 Score = 156 bits (172), Expect = 7e-32 Identities = 180/240 (75%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| || |||||||| ||||| || ||||||||| |||| || ||||| | | Sbjct 5239653 TGAACTTGGTAACAGCCTTGGTGCCCTCAGACACGGCGTGCTTGGCGAGCTCGCCCGGGA 5239594 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || |||||||| | ||||||||||||||| | | ||| ||| |||||| | Sbjct 5239593 GGACGAGGCGCACCGAGGTCTGGATCTCGCGAGAGGTGATGGTGGGCTTCTTGTTGTAAC 5239534 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGC-CGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | || ||||| ||||||| ||| ||| |||| || ||||||| || |||||| Sbjct 5239533 GGGCGAGGCGCGCGGCCTC-CTGCGCGAGCTTCTCGAAGATATCGTTGATGAAGGAGTTC 5239475 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| | || ||||||||| | ||||||||| |||||||| ||||||||| Sbjct 5239474 ATGATGGACATGGCCTTAGAGGAGATGCCGATGTCGGGGTGGACCTGCTTCAGCACCTTG 5239415 >seq61 Length=1472992 Score = 122 bits (134), Expect = 1e-21 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 2035612 AGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 2035671 |||||||||| ||||||||| || | ||||| ||||||||||||||| |||||||| Sbjct 1386212 AGGTCGACCAGAACACCCTCTTCGACCTCATCCTGGCCGCCAACTACCTCAACATCAAGG 1386153 Query 2035672 CCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGG 2035731 ||| ||||| | ||| ||||||| || | | |||||||||||| | |||||| Sbjct 1386152 GCCTGCTCGACCTCACCTGCGAGACCGTCGCTGAGATGATCAAGGGCAAGACTCCCGAGA 1386093 Query 2035732 ACATCCGCAAGACCTTTAACATCAAGTACG 2035761 | |||||| |||| || ||||||||| ||| Sbjct 1386092 AGATCCGCGAGACTTTCAACATCAAGAACG 1386063 >seq95 Length=674688 Score = 96.9 bits (106), Expect = 5e-14 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 || || ||||||||| |||||||| ||| || ||| | ||| ||||||| || || Sbjct 120244 GCTGCAAACTACCTCAACATCAAGGGCCTGCTGGATCTTACCTGCCAGACCGTTGCTGAC 120185 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAG 2035757 | |||||||||||| | |||||||| ||||||||||| || ||||||||| Sbjct 120184 ATGATCAAGGGCAAGACTCCCGAGGAGATCCGCAAGACGTTCAACATCAAG 120134 >seq66 Length=1353463 Score = 87.8 bits (96), Expect = 3e-11 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 2035612 AGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 2035671 |||||||||| ||||||||||| | | |||||||| || || || ||| |||||||| Sbjct 656633 AGGTCGACCAGGCCACCCTCTTTCACCTCATCCTCGCTGCAAATTATCTCAACATCAAGG 656692 Query 2035672 CCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGG 2035731 ||| ||||| | | |||| || || || | || ||||||||| | |||||| Sbjct 656693 GCCTTCTCGACCTCACCCACCAGACTGTTGCAGACATGATAAAGGGCAAGACTCCCGAGC 656752 Query 2035732 ACATCCGCAAGACCTTTAACATCAAG 2035757 | |||| | |||| || ||||| ||| Sbjct 656753 AGATCCTCTAGACTTTCAACATTAAG 656778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916179915899375