Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq57 91.5 1e-13 seq17 86.0 5e-12 >seq57 Length=1649376 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || || || ||||| ||||| || | || ||| || Sbjct 1449422 ATGCAGATCTTCGTCAAGACGTTGACTGGCAAGACCATCACTCTTGAGGTAGAGACTTCG 1449481 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | || || |||||| ||||| || ||| | ||| |||||| Sbjct 1449482 GATACTATTGATAATGTTAAGGCCAAGATTCAGGATAAGGAGGGCATCCCCCCAGATCAG 1449541 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || |||| ||| || || ||||| || || | | ||| |||| || |||||| Sbjct 1449542 CAGAGGCTCATTTTTGCTGGCAAGCAGCTAGAAGATGGCCGTACATTGGCTGATTACAAC 1449601 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || || ||||||||||| | ||| | ||| || Sbjct 1449602 ATCCAGAAGGAGTCTACTCTCCACCTTGTGCTG 1449634 >seq17 Length=3182705 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| |||||||| |||| |||| | Sbjct 3006853 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATTACGCTCGAGGTGGAGTCCTCG 3006794 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 3006793 GACACCATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 3006734 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||| | || || || ||||| ||||||| || | || ||||||||| Sbjct 3006733 CAGAGGCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGGCGTACCCTCGCTGACTACAAC 3006674 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || |||||||| || | ||| ||||| || | || |||| || Sbjct 3006673 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGCCTGAGAGGAGG 3006627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398873761680625