Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq57 118 8e-22 seq24 86.0 5e-12 seq8 86.0 5e-12 >seq57 Length=1649376 Score = 118 bits (130), Expect = 8e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||| ||||| |||||||| || || || || ||||| || | ||||| | Sbjct 1450320 CGAAGGACCAAGTGAAGTGTGGATTCCTTCTGGATATTGTAATCAGCCAATGTGCGTCCA 1450261 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || |||||| |||| | || ||||| || || || || || || ||| Sbjct 1450260 TCCTCCAGCTGCTTTCCAGCAAATATAAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTG 1450201 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | ||| || ||| | || | |||||||| || || ||||||||||| Sbjct 1450200 TCTTGGATCTTTGCCTTCACATTATCAATGGTGTCAGAGCTCTCAACCTCAAGAGTTATG 1450141 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| | || || ||||| |||||||| Sbjct 1450140 GTCTTTCCAGTGAGCGTCTTCACAAAGATCTGCAT 1450106 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | |||||| || | || || ||||| || || || ||||| || || || Sbjct 1450560 CCACCCCTAAGACGCAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCC 1450501 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || || || |||||| | || | || ||||| ||||| || Sbjct 1450500 AATGTGCGCCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCCGGGGGT 1450441 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| ||||| || | || || ||| | |||| |||||||| || || Sbjct 1450440 ATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTGTCTATCGTGTCAGAGCTCTCAACC 1450381 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| ||||| || ||||| | || || |||||||||||||| Sbjct 1450380 TCTAGAGTGATAGTCTTCCCAGTGAGAGTCTTCACAAATATCTGCAT 1450334 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||||||| || || | ||||| || ||||| || || ||||| || || || Sbjct 1450104 CCACCCCTCAAACGAAGGACAAGGTGAAGTGTAGATTCCTTCTGGATGTTGTAGTCTGCC 1450045 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || || || || ||| | || | || ||||| ||||| || Sbjct 1450044 AGTGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGG 1449985 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| ||||| || | || || ||| | || | ||||||||| || || Sbjct 1449984 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCAGAACTCTCAACC 1449925 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || || ||||| | || || || || |||||||| Sbjct 1449924 TCAAGTGTGATCGTCTTCCCAGTGAGAGTCTTCACGAAGATCTGCAT 1449878 >seq24 Length=2721981 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| ||||||| |||||||||||||| || || || || || || || Sbjct 300581 CCTCCGCGGAGACGGAGCACCAGGTGAAGCGTGGATTCCTTCTGGATATTGTAGTCAGCG 300522 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| ||||| || || || || | || | | ||||| ||||| || Sbjct 300521 AGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGGG 300462 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || || || | || | ||||| || || || Sbjct 300461 ATGCCCTCCTTGTCCTGGATCTTAGCCTTTACGTTGTCGATGGTGTCCGAGGACTCCACC 300402 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | || || || || || || ||||| || || || |||||||| || Sbjct 300401 TCCAACGTGATGGTCTTCCCCGTCAAGGTCTTCACGAAGATCTGCATCTT 300352 >seq8 Length=4429347 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||| ||||| || ||||| || |||||||| || || || | ||||| ||| Sbjct 3702372 AGGACCAAGTGAAGAGTCGATTCCTTCTGAATGTTGTAGTCAGCCAGCGTGCGTCCATCC 3702313 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || || ||||||||| |||||| | ||||||||||| ||||| || || || || Sbjct 3702312 TCCAGCTGCTTGCCAGCAAATATCAGACGCTGCTGATCCGGAGGAATCCCTTCCTTATCC 3702253 Query 29695 TG 29696 || Sbjct 3702252 TG 3702251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385216265713125