Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq15 607 9e-169 seq72 159 4e-34 >seq15 Length=3529114 Score = 607 bits (672), Expect = 9e-169 Identities = 746/1013 (74%), Gaps = 6/1013 (1%) Strand=Plus/Minus Query 158775 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 158834 ||||| || | ||||||||| | | |||| |||||||||||||| || ||||| || Sbjct 3061865 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGC 3061806 Query 158835 CTTCTTCTTCTACCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTC 158894 || | || | || ||||||| | ||| | || |||||| |||| || || ||||| Sbjct 3061805 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 3061746 Query 158895 GCTACGAGCTGGTATACACATGGACTCGCTACTTCCTATCTTGAGGGT-GCAAACTTTCT 158953 | || |||||||| |||||| | |||| ||||||| | || ||| |||| ||||| Sbjct 3061745 GTAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGCAA--TTTCT 3061688 Query 158954 TA-CAGCAGCAGTTTCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGG 159012 || | || |||||||| || || ||| || | | | || ||| | |||| || |||| Sbjct 3061687 TAACGGCGGCAGTTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGG 3061628 Query 159013 GTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGGTCCAACTTGGGGGACTCTGGAATTTTG 159072 | || || || ||||||||||| | ||| |||| | ||||| || |||| ||||| Sbjct 3061627 GACCGGAAGCACAAGGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTG 3061568 Query 159073 TGGCGCTCCACGGTGCCTTTGCCCTAATTGGTTTCATGCTTCGCCAGTTTGAACTGGC-A 159131 | || ||||| || || ||||| ||||| ||||||||| | || || |||||||| || | Sbjct 3061567 TCGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTA 3061508 Query 159132 CGTCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTT 159191 |||| || | | || || || ||||| ||| | ||||||||||| || ||||||||| Sbjct 3061507 GGTCTGTTCAAT-TGCGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCTGTTTTT 3061449 Query 159192 GTCAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTT 159251 || ||| |||||||| || ||||| || || || ||||||| || || ||| ||| Sbjct 3061448 GTTTCCGTATTCCTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTTT 3061389 Query 159252 GGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGACACTA 159311 || || || || ||||| | ||| | || ||| | ||||| || || |||||||| | Sbjct 3061388 GGCGTAGCAGCTATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTG 3061329 Query 159312 AACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTGCTATT 159371 |||||||| ||||||||||||||||| || | |||||| ||| || |||| |||||| Sbjct 3061328 AACCCCTTTCATATGATGGGAGTTGCCGGAGTATTAGGTGCAGCTCTCCTATGCGCTATT 3061269 Query 159372 CATGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAG 159431 ||||||| || || ||||| || ||| ||| ||||| || ||||| ||||| Sbjct 3061268 CATGGGGCTACTGTAGAAAACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCGA 3061209 Query 159432 GCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 159491 || ||| | | ||||||| ||| || |||||||| |||||||| || |||||||| ||| Sbjct 3061208 GCTTTTAACCCCACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 3061149 Query 159492 TCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTTATGTTGTTT 159551 || || ||||| || |||| ||||| || || || ||| | |||||||||||| | ||| Sbjct 3061148 TCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 3061089 Query 159552 GTGCCTGTTATGGGTCTATGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTT 159611 || || || | ||| |||||| ||||||| | |||| || ||||| || || Sbjct 3061088 GTACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTA 3061029 Query 159612 CGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAAACG 159671 ||||| || || ||||| || || ||| | ||||| |||||||| |||||||| || Sbjct 3061028 CGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACT 3060969 Query 159672 TTCTACACCAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGAT 159731 ||||||||||| || |||||| | || || || | ||||| ||| ||||| || ||| Sbjct 3060968 TTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGAT 3060909 Query 159732 CAACCCCATGAAAACTTCATCTTCCCAGAAGAAGTTCTACCAAGAGGTAACGC 159784 || || |||||||| | || ||||| || || ||||||||| | || ||||| Sbjct 3060908 CAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 3060856 >seq72 Length=1231634 Score = 159 bits (176), Expect = 4e-34 Identities = 205/280 (73%), Gaps = 2/280 (1%) Strand=Plus/Plus Query 159025 AAGGGGATTTCGTCAGGTGGGTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 159084 |||||||||| | ||| |||| | ||||| || |||| |||||| || ||||| | Sbjct 291129 AAGGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTCGCTCTCCATG 291188 Query 159085 GTGCCTTTGCCCTAATTGGTTTCATGCTTCGCCAGTTTGAACTGGC-ACGTCTCATCGGT 159143 | || ||||| ||||| ||||||||| | || || |||||||| || | |||| || | Sbjct 291189 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGGTCTGTTCAAT 291248 Query 159144 ATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTC 159203 | || || || ||||| ||| | |||| |||||| || ||||||||||| ||| ||| Sbjct 291249 -TGCGGCCTTATAATGCAATTTCATTCTTTGGTCCAATCGCTGTTTTTGTTTCCGTATTC 291307 Query 159204 CTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCCGCA 159263 ||||| || ||||| || || || ||||||| || || ||| | ||| || || || Sbjct 291308 CTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTCTGGCGTAGCAGCT 291367 Query 159264 ATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATT 159303 ||||| | ||| | || ||| | ||||| || || |||| Sbjct 291368 ATATTTTGATTCATCCTTTTCTTCCAAGGATTTCATAATT 291407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545269340050000