Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq100 156 3e-32 seq77 105 5e-17 seq13 105 5e-17 seq72 91.5 1e-12 >seq100 Length=558633 Score = 156 bits (172), Expect = 3e-32 Identities = 690/1067 (65%), Gaps = 39/1067 (4%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| || || ||||||||||||||||| | ||||| ||| || |||||||| Sbjct 343944 GCAGAGACGTTCAGAATACCATTGGCATCAATGTCAAAACAGACAGTCATCTGAGGGACA 344003 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAAT---TAAATGTTCCCA-GATTATTATTATC 281541 || || ||||||| ||||| |||| || | || |||||| | ||| || || Sbjct 344004 CCCCTAGGAGCAGGGGGGAT----TCCAGATAGCTCAAACTTCCCAAGGAGATTGTTGTC 344059 Query 281542 TTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGA 281601 | | | | ||||| || ||| ||||| ||| ||| ||| || || || Sbjct 344060 CCTCATCCGGGTCCTCTCACCTTCATAAACCTGGATCAACACTCCAGGTTGGTTGTCAGA 344119 Query 281602 ATAAGTTGTAAATACTCTGGAT--TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATA 281659 || || | || || ||| || || || ||||| || ||||| || ||||| Sbjct 344120 GTAGGTGGAGAAGAC-CTG-ATCCTTCTTGGTTGGAATAGTGGTGTTCCTCGGAATAAGC 344177 Query 281660 TTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGG 281719 |||||| | || || || || || | |||||| | || || || ||||||| ||| Sbjct 344178 ACGGTCATGACTCCTCCTGCAGTCTCAAGACCAAGCAACAGTGGGGTAACATCAAGGAGG 344237 Query 281720 ACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCA 281779 | || | || | || |||| | | ||| ||| ||||| || || | ||||||| Sbjct 344238 AGAAGGTCCTGCACCTTCTCATTACCCTCTCCACTAAGGATAGCAGCCTGGACAGCAGCA 344297 Query 281780 CCATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAA 281837 || || |||||| ||||||||||||||| | || || || | || ||||||| || Sbjct 344298 CCGTAGGCAACATCTTCATCAGGATTAATGCTCTTGCAG--AGCTCCTTTCCATTGACAA 344355 Query 281838 AATTTGAAAGAAGTTGTCTTACCT-TAGGAATACGAGATGATCCTCCAACTAATACAATT 281896 | | || || || || | || | ||||| | || ||| || ||||| | |||| Sbjct 344356 AGTCCTGCAGCAGCTG-CTGAACTCTGGGAATTCTAGTTGAACCACCAACAAGGACAACA 344414 Query 281897 TCATGCACCTGTGATT-TATCCAGTTTTGAATCCAATAAAACTTTT-TCAACGGGTTCAA 281954 ||||| || || || |||||| | | ||| ||| | ||| || || || || | Sbjct 344415 TCATGGACAC-TGCTTATATCCATCTGGGCATCTC-TAAGGCATTTCTCCACTGGCTCCA 344472 Query 281955 GACCAGCTCTAAACAAGTC--TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGAC 282012 | ||||| | ||| || || | || || || | ||||| |||| ||| Sbjct 344473 TGCACTTCCTAAAGAGGTCCATGTTCA--GCTCCTCAAACCTGGCTCTGGTAATGGTGGT 344530 Query 282013 ATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGA 282072 || |||||||||| || || | || || | |||||| || || || | | ||||| Sbjct 344531 ATAGAAATCAATTCCCTCAAAAAGGGAGTCGATTTCAATGGTTGTCTGTGCAGTGGAAGA 344590 Query 282073 TAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG 282132 ||| | | ||||| | |||||||||||||| || || | |||| | |||| Sbjct 344591 TAGGGTCCTCTTAGCTCTCTCACATGCTGTCCTAAGCCTCC-TAAGAGAACGGG-GATTC 344648 Query 282133 --ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGA 282190 | | | ||| | || | ||| | ||| | ||| | | | | || || || Sbjct 344649 CCACTGATATCCTTCTTGTGTTTCCGCTTAATATCCTGGGAAAGTGGT-TCACCAGGCGG 344707 Query 282191 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 282250 || || || || || || || | | ||| | || | || || | || | || | Sbjct 344708 TTGTCGAAGTCCTCCCCACCAAGGTGAGTGTCACCGGCTGTGGCCTTCACCTCAAAGATA 344767 Query 282251 CCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGT 282310 || ||||||| | | |||| |||||| || ||| |||| | || |||||||| Sbjct 344768 CCCTCTTCAATGGTAAGCAGAGAGACATCAAAAGTGCCATCACCAAGGTCGAAAATAAGC 344827 Query 282311 ACATTCATTTCTTTGTCT----TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCA 282364 |||||| | || | | | || || |||||||| || |||| ||||||||| Sbjct 344828 ACATTCTTCTCACCAACACTAGTAGCCTTCTTGTCAAGACCGTAGGCAATTGCAGCAGCA 344887 Query 282365 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 282424 || || ||||| || |||| || ||||||||||||||||| || ||||| || || Sbjct 344888 GTAGGCTCATTGATGATTCGCATGACATTAAGACCAGCAATAACGCCAGCATCCTTTGTC 344947 Query 282425 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 || || | | |||||| || || || ||||| ||||| | ||| || Sbjct 344948 GCCTGCC--TCTGAATCATTGAAGTAAGCAGGTACAGTCACAACAGC 344992 >seq77 Length=972522 Score = 105 bits (116), Expect = 5e-17 Identities = 147/205 (72%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT-TGG-- 282331 |||||| ||| || || || | ||||| || || |||||| | || | | ||| Sbjct 234971 ACATCAAAGGTACCGCCTCCAAGGTCAAAGATGAGCACATTCTTCTCACCGACACTGGAA 235030 Query 282332 ---TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 282388 || || ||||||||||| |||| ||| ||||| || || ||||| || || | | Sbjct 235031 GCCTTCTTGTCAAGACCATATGCAATAGCTGCAGCGGTAGGCTCATTGATGATACGGAGC 235090 Query 282389 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 282448 ||||| ||||||||||| ||| ||||| || ||||| || || || || ||||| || Sbjct 235091 ACATTGAGACCAGCAATCACTCCAGCATCCTTGGTGGCCTGCCTCTGAGAGTCGTTGAAG 235150 Query 282449 TATGCAGGAACAGTAATAACGGCAT 282473 || |||||||| || | ||| |||| Sbjct 235151 TAGGCAGGAACTGTGACAACAGCAT 235175 >seq13 Length=3725751 Score = 105 bits (116), Expect = 5e-17 Identities = 149/208 (72%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334 |||||| ||| || || |||| |||||| | || | | |||| || | || | Sbjct 666717 ACATCAAAGGTACCGCCTCCCAAATCAAACACTAGAA---TTGTTTCATTATTTT---TC 666770 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || |||| ||||||||||| | ||||||||||| ||||| ||||| | | ||| | Sbjct 666771 TTCTCAAAACCATACGCAAGCGATGCAGCAGTTGGCTCATTTATAATACGAAGAACTTCC 666830 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 || || ||||| | || |||||| |||| ||| |||||||||||| || || || || Sbjct 666831 AGGCCCGCAATACGACCAGCATCTCTAGTTGCTGTTCTTTGTGAATCATTGAAGTACGCT 666890 Query 282455 GGAACAGTAATAACGGCATCTGTTACTT 282482 ||||| |||| || || | ||||| || Sbjct 666891 GGAACTGTAACCACTGCTTTTGTTATTT 666918 >seq72 Length=1231634 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| | | |||||| || ||||||||||| || || || ||||| || |||||| Sbjct 276926 CCATAAGACAGAGCAGCTGCTGTTGGTTCATTGATGATCCTTTCAACATCGAGGCCAGCA 276985 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | |||||||| || |||||||| | || | ||| || ||||| || ||||||||| Sbjct 276986 ATGCGGCCTGCATCCTTTGTGGCTTGACGCTGGGCATCATTGAAATAAGCTGGAACAGTA 277045 Query 282464 ATAACGGC 282471 || || || Sbjct 277046 ATCACAGC 277053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740599715141250