Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq57 170 4e-37 seq17 122 2e-22 seq49 111 3e-19 seq5 91.5 3e-13 >seq57 Length=1649376 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| |||||| || | ||| |||||||| || ||||| || || ||||||| Sbjct 1449648 CCACCCCTCAGACGCAGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCAGCC 1449589 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || |||||||| || || |||||||| || || || || |||||||| || Sbjct 1449588 AATGTACGGCCATCTTCTAGCTGCTTGCCAGCAAAAATGAGCCTCTGCTGATCTGGGGGG 1449529 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || |||||||| |||||||| || || ||||| ||||| ||||| || ||||| Sbjct 1449528 ATGCCCTCCTTATCCTGAATCTTGGCCTTAACATTATCAATAGTATCCGAAGTCTCTACC 1449469 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || |||||||| ||||||||||| || || |||||||| Sbjct 1449468 TCAAGAGTGATGGTCTTGCCAGTCAACGTCTTGACGAAGATCTGCAT 1449422 Score = 159 bits (176), Expect = 7e-34 Identities = 175/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || |||| |||||| || | ||| || || || || |||||||| || || |||| Sbjct 1449878 TACCACCCCTCAGACGCAGTACAAGGTGGAGGGTCGACTCCTTCTGTATGTTGTAGTCAG 1449819 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | || ||||| || || || ||||||||||| || || || || || |||| Sbjct 1449818 CTAGGGTACGGCCATCTTCGAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCCGGAG 1449759 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCT 82760 | || |||||||| || || ||||| || || ||||| ||||| || ||| || | || Sbjct 1449758 GGATGCCTTCCTTGTCCTGGATCTTGGCCTTAACATTGTCAATTGTGTCAG-AGCTCTCA 1449700 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||||||| || ||||||||||| | ||||| ||||| |||||||| Sbjct 1449699 ACCTCCAAAGTGATTGTCTTGCCTGTAAGGGTCTTAACAAAGATCTGCAT 1449650 Score = 143 bits (158), Expect = 5e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| | || || || ||||| || || ||||| ||||| ||||| ||||||| Sbjct 1450332 CCTCCTCGAAGGCGAAGGACCAAGTGAAGTGTGGATTCCTTCTGGATATTGTAATCAGCC 1450273 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || || || || || ||||||||||| || || || || || || || || Sbjct 1450272 AATGTGCGTCCATCCTCCAGCTGCTTTCCAGCAAATATAAGCCTCTGCTGGTCAGGTGGG 1450213 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || |||||||| ||||| |||||||| || ||||| ||||| || ||| || | || || Sbjct 1450212 ATGCCTTCCTTGTCTTGGATCTTTGCCTTCACATTATCAATGGTGTCA-GAGCTCTCAAC 1450154 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | |||||| ||||| || || | |||||| ||||| |||||||| Sbjct 1450153 CTCAAGAGTTATGGTCTTTCCAGTGAGCGTCTTCACAAAGATCTGCAT 1450106 Score = 125 bits (138), Expect = 1e-23 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || || | |||||| || | ||||||||| || || ||||| || || || |||| Sbjct 1450560 CCACCCCTAAGACGCAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCC 1450501 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || || || || || || ||||||||||| || || || || || || ||| Sbjct 1450500 AATGTGCGCCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCCGGGGGT 1450441 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || || ||||| || || ||||| || || ||||| || ||||| ||| || | || || Sbjct 1450440 ATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTGTCTATCGTGTCAG-AGCTCTCAAC 1450382 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || ||||| || || | ||||| |||||||||||||| Sbjct 1450381 CTCTAGAGTGATAGTCTTCCCAGTGAGAGTCTTCACAAATATCTGCAT 1450334 Score = 113 bits (124), Expect = 9e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | || ||||| ||||| ||||| || || ||||| | | | | || Sbjct 1450776 CGCAGGACAAGATGAAGAGTGGATTCCTTCTGGATGTTGTAATCTGCCAAGGTACGCCCA 1450717 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || |||||||| || || || || ||||||||||| ||||| ||||| Sbjct 1450716 TCCTCCAGCTGCTTCCCAGCAAATATAAGCCTCTGCTGATCTGGAGGAATTCCCTCCTTG 1450657 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774 || || ||||| || || || || || || || || || | || || || | || || Sbjct 1450656 TCCTGGATCTTCGCCTTCACGTTATCTATGGTGTC-GGAGCTCTCCACCTCAAGCGTGAT 1450598 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| ||| || |||||||| ||||| Sbjct 1450597 GGTCTTGCCAGTCAGCGTTTTGACAAATATTTGCAT 1450562 >seq17 Length=3182705 Score = 122 bits (134), Expect = 2e-22 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| |||| ||| || ||||| || ||||| || || || || | ||| | | || Sbjct 3005499 CGCAGCACTAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCCA 3005558 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||| ||||| || || || || || || || || || ||||| Sbjct 3005559 TCCTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTG 3005618 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774 || || ||||||||||| || || ||||| || || || | || || |||| || || Sbjct 3005619 TCCTGGATCTTTGCTTTCACGTTATCAATGGTGTC-GGAGCTCTCAACCTCCAGGGTGAT 3005677 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||| ||||| ||||| |||||||| Sbjct 3005678 GGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 3005713 Score = 107 bits (118), Expect = 4e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | || || || | ||| || || || || ||||| || || || |||| Sbjct 3114385 CCTCCCCTGAGGCGAAGCACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCG 3114326 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || || || ||||||||||| || || || || || |||| Sbjct 3114325 AGGGTGCGCCCGTCCTCCAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCCAGAGGG 3114266 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGG-TTCTAC 82762 || || ||||| || || ||||| || || | ||| ||||| |||| | ||| || || Sbjct 3114265 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGAAATTGTCAATGGTAT-ACCAGGACTCGAC 3114207 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| || | ||||| ||||| |||||||| Sbjct 3114206 CTCTAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 3114159 >seq49 Length=1823295 Score = 111 bits (122), Expect = 3e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || |||| | || || | ||| ||||| ||||| ||||| || || || || | Sbjct 157210 TACCACCCCTCAGCCTAAGCACAAGGTGAAGAGTGGATTCCTTCTGGATGTTGTAGTCCG 157269 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | || || || || || || ||||||||||| || | || || || || | Sbjct 157270 CAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGG 157329 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || |||||||| || || ||||| || || || ||| | || | Sbjct 157330 GGATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTGTCGATGGTGTCAGAGGACTCAA 157389 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| || | ||||| || || |||||||| Sbjct 157390 CCTCCAAGGTAATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 157438 Score = 98.7 bits (108), Expect = 2e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || |||| | ||| || | ||| || || || || ||||| || || || |||| Sbjct 157438 TACCACCCCTCAGCCTCAGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 157497 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||||| || || || || ||||||||||| || | || || || || | Sbjct 157498 CGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGG 157557 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| || || || || || || || || | || | Sbjct 157558 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGGACTCAA 157617 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || ||||| || || | ||||| ||||| |||||||| Sbjct 157618 CCTCCAGGGTAATAGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 157666 >seq5 Length=5556497 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | |||||| || || || ||||| || || ||||| | || | | ||| Sbjct 4050149 CGGAGGACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCCAGCGTGCGCCCG 4050090 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || ||||| || | || || || || || | || ||||| Sbjct 4050089 TCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGACGCCCTCCTTG 4050030 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || | ||| || || || || | | ||| || || || || |||| || ||| Sbjct 4050029 TCCTGCACCTTGGCCTTCACGTTCGCCACCGTGTCCGACGGCTCCACCTCCAGCGTGATC 4049970 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| |||||| || || |||||||| Sbjct 4049969 GTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 4049935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981819337711875