Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq12 93.3 1e-13 seq22 87.8 4e-12 >seq12 Length=3772834 Score = 93.3 bits (102), Expect = 1e-13 Identities = 154/219 (70%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 110538 ATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCT 110597 || || |||||| |||||| || ||||||||| ||||| ||| |||| || Sbjct 2780716 ATGAAAGATGATAGTATTGAGGGAATTTATGATACTCTTTCGGAATGTGCTGCGATAAGC 2780775 Query 110598 AAAAACTCTGGAGGAATTGGTAT-TCACGTTCATGATATTCGCTCAAAAGGAGCAAATAT 110656 |||| |||||||||| ||||| ||| ||||| ||||||| | | ||| |||| Sbjct 2780776 AAAACTGCTGGAGGAATCGGTATCTCAA-TTCATAATATTCGAGCTACTGGAAGTTATAT 2780834 Query 110657 CGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACAC 110716 | | | | || || |||| | ||||||||||| ||| || | || ||||| || || Sbjct 2780835 CCGAGGAACTAATGGGACTTCTAACGGACTTGTTCCTATGCTACGTGTTTTCAATGATAC 2780894 Query 110717 TGCAAAATATGTGAATCAAGGT---GGTAAGAGAAATGG 110752 |||| ||||| |||||||| || |||||||| || Sbjct 2780895 TGCACGTTATGTTGATCAAGGTGGAGGCAAGAGAAAAGG 2780933 >seq22 Length=2792836 Score = 87.8 bits (96), Expect = 4e-12 Identities = 120/166 (72%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 305324 GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAA 305383 |||| ||||| | ||| | |||||| || |||||||||||||| |||| ||| Sbjct 2327197 GATTATGTTCTTCTTAATCGACAACCAAGTCTTCATAAAATGTCTATCATGGGGCATCGT 2327138 Query 305384 GTCAAAGTATTAT--CTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATA 305441 ||||| ||||| | | | || |||||||| ||| | || | | || || | Sbjct 2327137 ATCAAA--ATTATGCCCTGCTCAACTTTTCGATTGAATTTGTCTGTCACTTCACCATACA 2327080 Query 305442 ATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 |||| ||||||||||| |||||||||||||||||||| || || || Sbjct 2327079 ATGCTGATTTTGATGGGGATGAAATGAATATGCATGTTCCCCAGTC 2327034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186803296225625