Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq49 91.5 1e-13 seq8 86.0 4e-12 seq5 86.0 4e-12 seq165 84.2 1e-11 seq4 84.2 1e-11 >seq49 Length=1823295 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| || |||||| || || || |||||||| || | Sbjct 156984 CCACCACGGAGACGAAGCACCAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGCC 157043 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || ||| | || |||| || || || |||||||||| ||||||||| || | || Sbjct 157044 AGGGTACGTCCATCCTCCAGCTGCTTGCCTGCAAAAATCAGACGCTGCTGGTCCGGTGGG 157103 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||| |||| ||| |||| |||||| || || || Sbjct 157104 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CATTGTCAATGGTGTCTGAAGACTCTAC 157162 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | || || ||||||||||||||| Sbjct 157163 CTCCAAGGTGATAGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCATA 157211 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| || | | | ||||| || || ||| ||| || || |||||||| || | Sbjct 157894 ACCACCCCTGAGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 157953 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| |||| || | || || ||||| || || | ||||||||| || | || Sbjct 157954 GAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 158013 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| ||| || |||| ||| ||| | |||||| || |||| Sbjct 158014 GATGCCCTCCTTGTCCTGAATCTTGGCCTTCA-CATTGTCGATGGTGTCCGAGGACTCCA 158072 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || | || || || |||||||||||| Sbjct 158073 CCTCAAGAGTGATGGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCATA 158122 >seq8 Length=4429347 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || || ||| || || | |||||| |||| || ||||| ||||| || Sbjct 2522473 CACCAGGTGCAGCGTCGACTCCTTCTGGACGTTGTAGTCGGCCAGCGTGCGCTCGTCCTC 2522414 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || |||||||| |||| |||||||| || |||| | || ||| ||||| Sbjct 2522413 CAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGCTCCGGCGGGATACTTTCCTTGTCCTG 2522354 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || || | |||| | | ||||| |||| | || || || | ||| | ||| | Sbjct 2522353 GATCTT-TGCCTTGACATTGGCGACGGTATCGCCGGTCTCGACCTCGAGCGTCACCGTCT 2522295 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 | || | | ||| || || ||||||||||| || Sbjct 2522294 TTCCGATCAGCGTCTTCACGAAGATCTGCATCGT 2522261 >seq5 Length=5556497 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || ||||||||||||| || ||||| |||| |||| || || ||||| || Sbjct 4050126 CTCCTTCTGGATGTTGTAATCGGCCAGCGTGCGCCCGTCCTCCAGCTGCTTCCCGGCGAA 4050067 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | |||||||| || |||| || || || ||||| | || |||| | Sbjct 4050066 GATGAGCCGCTGCTGGTCCGGCGGGACGCCCTCCTTGTCCTGCACCTTGGCCTTCACGTT 4050007 Query 33678 AGTCACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 | ||| ||||| | ||||| || | ||||||||| || || || | ||| || || Sbjct 4050006 CGCCACCGTGTCCGACGGCTCCACCTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCAC 4049947 Query 33738 AAAGATCTGCAT 33749 ||||||||||| Sbjct 4049946 GAAGATCTGCAT 4049935 >seq165 Length=58862 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | || | ||||| ||| || ||| ||| || || |||||||| |||| Sbjct 23324 CACCACCGCGGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 23383 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 ||| ||||| | || || | || || ||||| || || | |||||||| || ||| Sbjct 23384 CGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCG 23443 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || || ||||| || || |||| | | ||| | |||||| || ||| Sbjct 23444 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCC 23502 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | |||||| || || || || | || || || ||||||||||| Sbjct 23503 ACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 23552 >seq4 Length=5694366 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | || | ||||| ||| || ||| ||| || || |||||||| |||| Sbjct 3329493 CACCACCGCGGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 3329434 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 ||| ||||| | || || | || || ||||| || || | |||||||| || ||| Sbjct 3329433 CGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCG 3329374 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || || ||||| || || |||| | | ||| | |||||| || ||| Sbjct 3329373 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCC 3329315 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | |||||| || || || || | || || || ||||||||||| Sbjct 3329314 ACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 3329265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328701496200000