Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq23 372 4e-97 seq14 150 3e-30 seq3 149 9e-30 seq57 145 1e-28 seq55 136 6e-26 seq1 134 2e-25 >seq23 Length=2780208 Score = 372 bits (412), Expect = 4e-97 Identities = 434/577 (75%), Gaps = 14/577 (2%) Strand=Plus/Minus Query 1455738 CGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAG 1455797 || ||||||| | ||||||| ||| |||| || ||| ||||| | ||| || ||| Sbjct 1222543 CGGACCGCTTCTCCATGTTCCCGATCAAGTACCCGCAGATCTGGGAGTTTTAC-AAGAAG 1222485 Query 1455798 GCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGG 1455857 || | |||||||| ||||||||||||||||| |||||| |||||| || ||||||| Sbjct 1222484 GCGGTAGCCTCCTTCTGGACCGCCGAGGAGGTGGACCTCTCTGCCGACGCGCGCCACTGG 1222425 Query 1455858 GT-GTCGC--TGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGC 1455914 | | ||| | | | ||||||||||||||||||| ||||| || ||||| || ||| Sbjct 1222424 GACGCCGCCCTCAACCCCGACGAGCGCCATTTCATCTCCCACGTGCTGGCCTTCTT-CGC 1222366 Query 1455915 CGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATT 1455974 |||| ||| ||||||||| |||||||| || |||||| ||| || ||||| | Sbjct 1222365 CGCCTCCGACGGCATCGTGCTGGAGAACCTCGCGTCCCGCTTCATGTCGGACGTCCAGGT 1222306 Query 1455975 GCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAAC 1456034 | ||||| || |||||||||||||||||||||||||| ||||||||||| || | Sbjct 1222305 CGCCGAGGCGCGCGCCTTTTACGGGTTCCAGATCGCCATCGAGAACATCCACTCGGAGAT 1222246 Query 1456035 CTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCG 1456094 |||||||| ||| | || || ||| || ||| | |||||||||| ||| || || Sbjct 1222245 GTACTCGCTGCTGCTGGAGACGTACATCCGCGACGGCGCGGAGAAGGACCGCCTGTTCCG 1222186 Query 1456095 CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAA 1456154 ||||||||| ||||| || | ||| | |||||||| ||||| ||| |||||| Sbjct 1222185 CGCCATCGAGACGGTTCCCGCCGTGCGCCGCAAGGCCGAGTGGGCCATGCGCTGGATC-- 1222128 Query 1456155 CAAGGAGGGCCTCGA-CACTTTGCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCAT 1456212 || ||| ||| | ||| || ||||| ||||||| || ||| ||||||||||||| Sbjct 1222127 ----GACGGCGGCGAGCGCTTCGCGGAGCGCCTCGTCGCGTTCGCCTGCGTCGAGGGCAT 1222072 Query 1456213 CTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 ||| ||||||||| |||||||||||||| |||||||||||||||||||||||||| || Sbjct 1222071 CTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGG 1222012 Query 1456273 TCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 | || ||| |||||| | ||| |||||||| Sbjct 1222011 AC-TCACCTTCTCCAACGAGCTCATCTCGCGCGACGA 1221976 Score = 176 bits (194), Expect = 6e-38 Identities = 241/327 (74%), Gaps = 10/327 (3%) Strand=Plus/Minus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGC-CGTCGACCGAC 1456510 ||||||| ||||| ||||| || |||||| | ||| | ||||| || ||| | Sbjct 1221970 TGCACTGCGACTTCGCCTGCCTACTCTACGACCTCCTCCGCTCCAAGCTCGACGAGGCCC 1221911 Query 1456511 GTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCG 1456570 | | || | ||||| ||| ||| |||||||| |||||| ||||| ||| |||| || Sbjct 1221910 GCGTCCGCG-AGATCGTCGCCGACGCCGTCGACATCGAGCGCGAGTTCGTCTGCGACGCG 1221852 Query 1456571 CTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTG 1456630 || || |||||| |||||||||||| | ||||||| |||||||||| | | || | Sbjct 1221851 CTCCCCTGCGCGCTCGTCGGCATGAACGGC-GTGCTCATGAGCCAGTACATCG-AGTTCG 1221794 Query 1456631 TCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACG--GCCAACC 1456688 ||||||||||||||||| |||||| || | ||||| ||| ||| | ||||| Sbjct 1221793 TCGCCGACCGCCTGCTCATGGCGCTGGGACAC-AAGAAGATATAC--AACGTCGTCAACC 1221737 Query 1456689 CGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG 1456748 ||||| ||||||||| | ||||| || ||||||||||||| || |||||| |||| Sbjct 1221736 CGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAATTTCTTCGAGAAGCGCG 1221677 Query 1456749 T-GGCGAGTACGCCAAGGCCGGCGTCA 1456774 | ||||||||| |||||| ||||| Sbjct 1221676 TCGGCGAGTACCAGAAGGCCTCCGTCA 1221650 >seq14 Length=3622118 Score = 150 bits (166), Expect = 3e-30 Identities = 174/230 (76%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| |||||||| |||||| || | | || |||| ||| |||| || Sbjct 1886802 ATCTTCAAGGTGCTGAAGCAGGTCCACCCC-GA--CATCGG--CATC-TCCTCCAAGGCC 1886855 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||||| || |||||||||| |||| ||| | |||||||| Sbjct 1886856 ATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGGCCGCC 1886915 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||||| ||||||| ||| ||| | | ||||||||||||||| | || Sbjct 1886916 AAGCTCGCGCGCTACAACAAGAAGCCCACCATCACCTCCCGCGAGATCCAGACCTCGGTC 1886975 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| || | | |||||| || |||| ||||||||||||||||||||| Sbjct 1886976 CGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCAC 1887025 Score = 113 bits (124), Expect = 6e-19 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||| | |||||||| |||||| | || | ||| ||| |||| || Sbjct 1856569 ATCTTCAAGGTATTGAAGCAGGTCCACCCCGACATCGGT-----ATC-TCCTCCAAGGCC 1856516 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||||| || |||||||||| |||| ||| | |||||| | Sbjct 1856515 ATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGGCTGCC 1856456 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||||| |||||| || ||| | | || |||||||||||| | || Sbjct 1856455 AAGCTCGCGCGCTATAACAAGAAGCCTACCATCACCTCTCGTGAGATCCAGACCTCGGTC 1856396 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || | | ||||| || |||| |||||||||||||||||| |||| Sbjct 1856395 CGCCTCGTCCTTCCAGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGTACCA 1856344 >seq3 Length=7343539 Score = 149 bits (164), Expect = 9e-30 Identities = 174/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||||||||||||||| || || | |||| ||||| || | || Sbjct 1346106 ATCTTCAAGGTGCTCAAGCAGGTGCATCCG-GA--CATTGGTATCTCCTCGAA---GGCC 1346053 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||||| || |||||||||| |||| ||| | ||||| | Sbjct 1346052 ATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGGCGGCG 1345993 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||||||| | | ||||||| ||| ||| |||||||||| |||||| | ||| Sbjct 1345992 CGCCTGGCGAGGTACAACAAGAAGCCCACCATCACGTCGCGCGAGATTCAGACCTCGGTG 1345933 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || | | |||||| || |||| ||||||||||||||||||||||| Sbjct 1345932 CGCCTTGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCA 1345881 >seq57 Length=1649376 Score = 145 bits (160), Expect = 1e-28 Identities = 173/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||| | ||||||||||||||| || | | || |||||||| | || Sbjct 947066 ATCTTCAAGGTGTTGAAGCAGGTGCACCCC-GA--CATCGGAATCTCCTCCAA---GGCC 947013 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||||| || |||||||||| |||| ||| | |||||||| Sbjct 947012 ATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGGCCGCC 946953 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || |||| ||||||| ||| ||| | | ||||||||||||||| |||| Sbjct 946952 AAGCTCGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGCGAGATCCAGACCTCCGTC 946893 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || | | |||||| || |||| |||||||||||||||||| |||| Sbjct 946892 CGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGGACCA 946841 >seq55 Length=1724501 Score = 136 bits (150), Expect = 6e-26 Identities = 171/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||||||||||||||| ||||| || | | ||| |||||||| | || Sbjct 1552886 ATCTTCAAGGTGCTCAAGCAGGTCCACCCG-GA--CATCGGGATCTCCTCCAA---GGCC 1552833 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| |||||||||| | || ||| | |||||||| Sbjct 1552832 ATGTCCATCATGAACTCGTTCATCAACGACATCTTTGAGAAGCTCGCCGGCGAGGCCGCC 1552773 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || |||| ||||||| ||| || | | ||||||||||||||| | ||| Sbjct 1552772 AAGCTCGCCCGCTACAACAAGAAGCCCACCATTACCTCCCGCGAGATCCAGACCTCGGTG 1552713 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || | | ||||| || |||| |||||| ||||| |||||||||| Sbjct 1552712 CGCCTCGTCCTCCCAGGCGAGCTCGCCAAGCACGCGGTCTCTGAGGGCACCA 1552661 >seq1 Length=7984747 Score = 134 bits (148), Expect = 2e-25 Identities = 174/233 (75%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| |||||||| |||||| || | | || |||| ||| ||| || Sbjct 5239410 ATCTTCAAGGTGCTGAAGCAGGTCCACCCC-GA--CATCGG--CATC-TCCTCTAAGGCC 5239463 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCG-GCACCGAGGCCGG 725029 ||||| ||||||||||| || ||||||| || |||| ||| ||| ||||||| Sbjct 5239464 ATGTCCATCATGAACTCCTTCATCAACGATATCTTCGAGAAGCTCGCGCAG-GAGGCCGC 5239522 Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 ||||| || || | ||||||| ||| ||| | | ||||||||||||||| | || Sbjct 5239523 GCGCCTCGCCCGTTACAACAAGAAGCCCACCATCACCTCTCGCGAGATCCAGACCTCGGT 5239582 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||| || | | ||||| || |||| ||||||||| || |||||||||| Sbjct 5239583 GCGCCTCGTCCTCCCGGGCGAGCTCGCCAAGCACGCCGTGTCTGAGGGCACCA 5239635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177750917601250