Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq15 641 4e-179 seq72 190 2e-43 seq28 89.7 6e-13 >seq15 Length=3529114 Score = 641 bits (710), Expect = 4e-179 Identities = 752/1014 (74%), Gaps = 2/1014 (0%) Strand=Plus/Minus Query 159379 TTTGATGTCCTGGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 159438 |||||| | |||| |||||| | | | || || || || ||||| || ||||| || Sbjct 3061865 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGC 3061806 Query 159439 CTCCTACTTCTTCCCACTGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACTTTT 159498 || | || |||| ||||||| | || | || |||||| |||| || || |||||| Sbjct 3061805 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 3061746 Query 159499 ATCACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTACCTTGAAGGTGCTAATTTTCTC 159558 | || |||||| ||||| || | ||||||||||| | |||||| ||||| | Sbjct 3061745 GTAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGCAATTTCTTA 3061686 Query 159559 ACGGCAGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 159618 ||||| || || || || |||||| || | | | || ||| | | ||||| ||||| Sbjct 3061685 ACGGCGGCAGTTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGA 3061626 Query 159619 CCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGTT 159678 || || | ||||| || || || ||||||||| | || || | ||| | ||||| Sbjct 3061625 CCGGAAGCACAAGGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTC 3061566 Query 159679 GCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTCG- 159737 |||||||| || || || || || |||||||| ||| |||| ||||||||| ||||| | Sbjct 3061565 GCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGG 3061506 Query 159738 TCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGT 159797 ||| ||| | || ||||| ||||| ||| | ||||||||||| || ||||||||||| Sbjct 3061505 TCT-GTTCAATTGCGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCTGTTTTTGT 3061447 Query 159798 CAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGG 159857 |||||||||||| ||||||||||| || ||| |||||||||||||| ||||| || Sbjct 3061446 TTCCGTATTCCTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTTTGG 3061387 Query 159858 GGTAGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAA 159917 |||||||| || ||| ||||| | | ||| | || || || || || ||||| | || Sbjct 3061386 CGTAGCAGCTATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAA 3061327 Query 159918 CCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATCCA 159977 |||||| ||||||||||||||||| || || |||||| ||| || | || || || || Sbjct 3061326 CCCCTTTCATATGATGGGAGTTGCCGGAGTATTAGGTGCAGCTCTCCTATGCGCTATTCA 3061267 Query 159978 TGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAAGGC 160037 ||| ||||||||||| ||||| | || |||||||| || ||||| || || || Sbjct 3061266 TGGGGCTACTGTAGAAAACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCGAGC 3061207 Query 160038 GTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTC 160097 ||| | || ||||||| ||||| |||||||| |||||||| || |||||||| ||||| Sbjct 3061206 TTTTAACCCCACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 3061147 Query 160098 GCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGT 160157 || ||||| |||||||| ||||| || || || ||| | ||||| || ||| | ||||| Sbjct 3061146 CCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGT 3061087 Query 160158 GCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACCTTCG 160217 || || | ||| |||||| |||||||| | |||| || ||| | ||||| || Sbjct 3061086 ACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACG 3061027 Query 160218 TGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGACCTT 160277 ||| || || ||||| ||||| || | ||||| |||||||||||||||||||| || Sbjct 3061026 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTT 3060967 Query 160278 CTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTGATCA 160337 ||||||||| || || || || || || || ||||||| ||||||||| || ||||| Sbjct 3060966 CTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCA 3060907 Query 160338 ACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCACT 160391 || |||||||| |||| ||||||||||| || ||||| | || ||||| || Sbjct 3060906 GCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 3060853 >seq72 Length=1231634 Score = 190 bits (210), Expect = 2e-43 Identities = 202/264 (77%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 159643 CGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGTTGCTCTCCACGGTGCATTCGCTCTC 159702 || ||||||||| | || || | ||| | ||||| |||||||| || || || || || Sbjct 291143 CGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTGCACTA 291202 Query 159703 ATAGGTTTTATGCTACGGCAATTTGAAATTGCTCG-TCTAGTTGGTATCCGTCCTTACAA 159761 |||||||| ||| |||| ||||||||| ||||| | ||| ||| | || ||||| || Sbjct 291203 ATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGGTCT-GTTCAATTGCGGCCTTATAA 291261 Query 159762 TGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTATTCCTTATCTATCCACT 159821 ||| ||| | |||| |||||| || ||||||||||| |||||||||||| |||||||| Sbjct 291262 TGCAATTTCATTCTTTGGTCCAATCGCTGTTTTTGTTTCCGTATTCCTTATTTATCCACT 291321 Query 159822 GGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCT 159881 ||| || ||| |||||||||||||| |||| || |||||||| || ||| ||||| | Sbjct 291322 GGGACAATCTGGTTGGTTCTTTGCACCGAGTTCTGGCGTAGCAGCTATATTTTGATTCAT 291381 Query 159882 GTTGTTCCTTCAGGGTTTCCACAA 159905 | ||| | || || || || || Sbjct 291382 CCTTTTCTTCCAAGGATTTCATAA 291405 >seq28 Length=2533697 Score = 89.7 bits (98), Expect = 6e-13 Identities = 188/282 (67%), Gaps = 24/282 (9%) Strand=Plus/Plus Query 159559 ACGGCAGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 159618 || || || || || | ||||||||| | | | || ||| | | | ||| ||||| Sbjct 2401559 ACAGCGGCAGTTTCCATCCCTGCTGATAGTTTAGCACACTCTTTGTTGCCACTATGGGGA 2401618 Query 159619 CCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGTT 159678 || || | ||||| || || || ||||| ||| | || || ||||| Sbjct 2401619 CCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGGGG----------TTTGTC 2401668 Query 159679 GCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTC-G 159737 ||| |||| || || || || || |||||||| ||| |||| ||||||||| |||||| | Sbjct 2401669 GCTTTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCAG 2401728 Query 159738 TCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGT 159797 ||| ||| | || ||||| ||||| ||| | |||||| ||||||| Sbjct 2401729 TCT-GTTCAATTGCGGCCTTATAATGCAATTTCATTCTCTA------------TTTTTGT 2401775 Query 159798 CAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTT 159839 | |||||||| | ||||||||||| || ||| ||||| Sbjct 2401776 TTCCATATTCCTTTTTTATCCACTGGGACAATCTGATTGGTT 2401817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573019523250000