Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq15 601 4e-167 seq72 168 7e-37 >seq15 Length=3529114 Score = 601 bits (666), Expect = 4e-167 Identities = 752/1022 (74%), Gaps = 8/1022 (1%) Strand=Plus/Minus Query 161688 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 161747 ||||| || | ||||||||| | | |||| |||||||||||||| || ||||| || Sbjct 3061865 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGC 3061806 Query 161748 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTC 161807 || | || |||| ||||||| | ||| | || |||||| |||| || || ||||| Sbjct 3061805 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 3061746 Query 161808 GCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTGAGGGT-GCAAACTTTCT 161866 | ||| |||||||||||||| | |||||||||||| | || ||| |||| ||||| Sbjct 3061745 GTAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGCAA--TTTCT 3061688 Query 161867 TA-CAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGG 161925 || | ||| ||||| ||| || ||| | | | | || ||| | | || || |||| Sbjct 3061687 TAACGGCGGCAGTTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGG 3061628 Query 161926 GTCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTTG 161985 | || || || ||||||||||| || ||| |||| | ||||| || |||| ||||| Sbjct 3061627 GACCGGAAGCACAAGGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTG 3061568 Query 161986 TGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGC-A 162044 | || |||||||| || || || ||||| || |||||| | ||||| |||||||| || | Sbjct 3061567 TCGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTA 3061508 Query 162045 CGTCTTATTGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTT 162104 |||| | | | || || || ||||| ||| | ||||||||||| || ||||||||| Sbjct 3061507 GGTCTGTTCAAT-TGCGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCTGTTTTT 3061449 Query 162105 GTCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTT 162164 || ||| |||||||| || ||| |||| || || ||||||| || || ||| ||| Sbjct 3061448 GTTTCCGTATTCCTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTTT 3061389 Query 162165 GGGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTC-AAGGATTCCATAACTGGACCCT 162223 || || ||||| || ||| ||||| | | ||||||| ||||||| ||||| ||||| | Sbjct 3061388 GGCGTAGCAGCTATATTTCGATTCATCCT-TTTCTTCCAAGGATTTCATAATTGGACGTT 3061330 Query 162224 GAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTAT 162283 ||||||||| ||||||||||||||||| || || |||||| ||| || |||| ||||| Sbjct 3061329 GAACCCCTTTCATATGATGGGAGTTGCCGGAGTATTAGGTGCAGCTCTCCTATGCGCTAT 3061270 Query 162284 TCACGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAA 162343 ||| || | || || ||||| || ||| ||| ||||| || ||||| ||||| Sbjct 3061269 TCATGGGGCTACTGTAGAAAACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCG 3061210 Query 162344 GGCGTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTG 162403 || ||| | | || || | |||||| |||||||| |||||||| || |||||||| || Sbjct 3061209 AGCTTTTAACCCCACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTG 3061150 Query 162404 GTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTT 162463 ||| || ||||| ||| |||| ||||| || || || ||| | ||||| || ||| | || Sbjct 3061149 GTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATT 3061090 Query 162464 TGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCT 162523 ||| || || | ||| |||||| |||||||| | |||| || ||||| ||||| Sbjct 3061089 TGTACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCT 3061030 Query 162524 TCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAAC 162583 ||||| || || ||||| ||||| ||| | ||||| ||||||||||| ||||| || Sbjct 3061029 ACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGAC 3060970 Query 162584 GTTCTACACTAAGAACATTCTGCTCAATGAAGGACTACGTGCATGGTTAGCACCTGCCGA 162643 |||||||| || || ||||| | || || || | ||||| ||| | ||| || || Sbjct 3060969 TTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGA 3060910 Query 162644 CCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTA 162703 || || ||||| || |||| ||||| || || ||||| || | || ||||| ||||| Sbjct 3060909 TCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTA 3060850 Query 162704 AT 162705 || Sbjct 3060849 AT 3060848 >seq72 Length=1231634 Score = 168 bits (186), Expect = 7e-37 Identities = 208/279 (75%), Gaps = 4/279 (1%) Strand=Plus/Plus Query 161938 AAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATG 161997 |||||||||| || ||| |||| | ||||| || |||| |||||| || ||||||| Sbjct 291129 AAGGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTCGCTCTCCATG 291188 Query 161998 GTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGC-ACGTCTTATTGGT 162056 | || || || ||||| || |||||| | ||||| |||||||| || | |||| | | Sbjct 291189 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGGTCTGTTCAAT 291248 Query 162057 ATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTC 162116 | || || || ||||| ||| | |||| |||||| || ||||||||||| ||| ||| Sbjct 291249 -TGCGGCCTTATAATGCAATTTCATTCTTTGGTCCAATCGCTGTTTTTGTTTCCGTATTC 291307 Query 162117 CTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCA 162176 ||||| || ||| |||| || || ||||||| || || ||| | ||| || ||||| Sbjct 291308 CTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTCTGGCGTAGCAGCT 291367 Query 162177 ATCTTTAGATTCCTGTTGTTTCTT-CAAGGATTCCATAA 162214 || ||| ||||| | | |||||| |||||||| ||||| Sbjct 291368 ATATTTTGATTCATCCT-TTTCTTCCAAGGATTTCATAA 291405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559499628875000