Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq15 500 1e-136 seq72 120 4e-22 >seq15 Length=3529114 Score = 500 bits (554), Expect = 1e-136 Identities = 718/1009 (71%), Gaps = 2/1009 (0%) Strand=Plus/Minus Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912 ||||||| |||| |||||| | | || || | || | ||| | || ||||| || | Sbjct 3061863 TGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGCCT 3061804 Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGT 175972 | | || |||| ||||||| | || | || || ||| |||| || || |||||||| Sbjct 3061803 ATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGT 3061744 Query 175973 CACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAACTTTCTCAC 176032 || |||||| |||||||| | ||| ||||||| | || ||| || || | || Sbjct 3061743 AACTTCTTGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGCAATTTCTTAAC 3061684 Query 176033 AGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCC 176092 ||||| || || || |||||| || | | | || ||| | | ||||| ||||| || Sbjct 3061683 GGCGGCAGTTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACC 3061624 Query 176093 TGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGC 176152 ||| | || || || || || ||| |||| | || || || ||| | ||||| || Sbjct 3061623 GGAAGCACAAGGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTCGC 3061564 Query 176153 TCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACT 176212 |||||| || || || || || || || |||||| | ||||| |||||||| || || Sbjct 3061563 TCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGGTC 3061504 Query 176213 CATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAG 176272 || | || || || || || ||| ||||| |||||| |||||||| ||||| Sbjct 3061503 TGTTCAATTGCGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCTGTTTTTGTTTC 3061444 Query 176273 TGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGT 176332 || || ||| | || ||||| || |||||| ||||||||||| || ||||| || Sbjct 3061443 CGTATTCCTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTTTGGCGT 3061384 Query 176333 GGCAGCAATCTTTAGATTCCTATTGTTTCTTC-AGGGTTTCCACAACTGGACACTGAACC 176391 ||||| || ||| ||||| | | ||||||| | || || || || ||||| |||||| Sbjct 3061383 AGCAGCTATATTTCGATTCATCCT-TTTCTTCCAAGGATTTCATAATTGGACGTTGAACC 3061325 Query 176392 CCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATG 176451 |||| ||||||||||||||||| || || |||||| ||| || |||| || || |||| Sbjct 3061324 CCTTTCATATGATGGGAGTTGCCGGAGTATTAGGTGCAGCTCTCCTATGCGCTATTCATG 3061265 Query 176452 GCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGT 176511 | | |||||| ||||| || |||| |||||||| || || |||||| || | Sbjct 3061264 GGGCTACTGTAGAAAACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCGAGCTT 3061205 Query 176512 TCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGC 176571 | | |||| || | |||||| || ||||| ||||| || || |||||||| ||||| | Sbjct 3061204 TTAACCCCACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCC 3061145 Query 176572 AAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCC 176631 ||||||| || ||||| ||| ||||| |||||| | || ||||||||| | ||||| | Sbjct 3061144 AAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTAC 3061085 Query 176632 CTGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTG 176691 | |||| ||| | ||| | ||||||| | |||| || ||||| || || |||| Sbjct 3061084 CCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTG 3061025 Query 176692 CTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCT 176751 | ||||| || || ||| || || | ||||| ||||||||||| ||||| ||||||| Sbjct 3061024 CCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCT 3060965 Query 176752 ACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAAC 176811 |||| || || || ||| | ||||| || | | || ||||||||| || |||||| | Sbjct 3060964 ACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGC 3060905 Query 176812 CACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 | ||||| || ||||||| || || |||||||| | || ||||| Sbjct 3060904 CTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 3060856 >seq72 Length=1231634 Score = 120 bits (132), Expect = 4e-22 Identities = 184/260 (71%), Gaps = 3/260 (1%) Strand=Plus/Plus Query 176115 CGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGCTCTCCACGGTGCCTTCGCTCTG 176174 || ||| |||| | || || || ||| | ||||| |||||||| || || || || || Sbjct 291143 CGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTGCACTA 291202 Query 176175 ATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACTCATTGGTATCCGTCCCTACAAC 176234 || || |||||| | ||||| |||||||| || || || | || || || || Sbjct 291203 ATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGGTCTGTTCAATTGCGGCCTTATAAT 291262 Query 176235 GCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGTTTCTTCTATACCCACTA 176294 || ||| ||||| |||||| |||||||| ||||| || || ||| | || ||||| Sbjct 291263 GCAATTTCATTCTTTGGTCCAATCGCTGTTTTTGTTTCCGTATTCCTTATTTATCCACTG 291322 Query 176295 GGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTA 176354 || |||||| ||||||||||| || | ||| || ||||| || ||| ||||| | Sbjct 291323 GGACAATCTGGTTGGTTCTTTGCACCGAGTTCTGGCGTAGCAGCTATATTTTGATTCATC 291382 Query 176355 TTGTTTCTTC--AGGGTTTC 176372 | ||||||| ||| |||| Sbjct 291383 CT-TTTCTTCCAAGGATTTC 291401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729923897425000