Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq15 526 3e-144 seq72 125 9e-24 >seq15 Length=3529114 Score = 526 bits (582), Expect = 3e-144 Identities = 721/1002 (72%), Gaps = 4/1002 (0%) Strand=Plus/Minus Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292 ||||||||||| | | |||| || || || ||||| || ||||| || || | || Sbjct 3061855 TGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGCCTATTGCTCT 3061796 Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352 |||| ||||||| | || | || |||||| |||| ||||| ||||||| || || Sbjct 3061795 TTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTT 3061736 Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTTA-CGGCAGCT 179411 |||| ||||| || | |||||||||||| | || ||| || ||||||| |||| || Sbjct 3061735 GGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACGGCGGCA 3061677 Query 179412 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 179471 || || || |||||| || | | | || ||| | | ||||| ||||| || || | Sbjct 3061676 GTTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACCGGAAGCA 3061617 Query 179472 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCAC 179531 || ||| |||| || ||||||||| | ||||| || |||| ||| || |||||||| Sbjct 3061616 CAAGGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTCGCTCTCCAT 3061557 Query 179532 GGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGG 179590 || || || || || || ||||||||| | | ||||||||||||||| | ||| | Sbjct 3061556 GGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGGTCTGTTCAA 3061497 Query 179591 TATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTT 179650 | | | ||||| ||||| ||| | || |||||||| || ||||| || || || || Sbjct 3061496 TTGCGG-CCTTATAATGCAATTTCATTCTCTGGTCCAATCGCTGTTTTTGTTTCCGTATT 3061438 Query 179651 CCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGC 179710 ||| || ||||| ||||||| || |||||| || || ||| ||||| || || || Sbjct 3061437 CCTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGCAGC 3061378 Query 179711 GATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCA 179770 || || | ||| | || ||| | || || || || || |||||| | |||||||| || Sbjct 3061377 TATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCCTTTCA 3061318 Query 179771 TATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTAC 179830 ||||||||||||||| || || |||| | ||| || || | ||||| ||||| | ||| Sbjct 3061317 TATGATGGGAGTTGCCGGAGTATTAGGTGCAGCTCTCCTATGCGCTATTCATGGGGCTAC 3061258 Query 179831 TGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTC 179890 |||||| || || | | |||||||| || ||||||||||| || ||| | | Sbjct 3061257 TGTAGAAAACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCGAGCTTTTAACCC 3061198 Query 179891 GACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTT 179950 || || | ||||| |||||||| |||||||| || |||||||| ||||| || ||||| Sbjct 3061197 CACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTT 3061138 Query 179951 CGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTAT 180010 ||| |||| ||||| || || || ||| | ||||| || ||| | ||||| || || | Sbjct 3061137 TGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCAC 3061078 Query 180011 GGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGA 180070 ||| |||||| |||||||| | |||| || ||||| ||||| ||||| || || Sbjct 3061077 CGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGA 3061018 Query 180071 TTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAA 180130 ||||| ||||| ||| | ||||| |||||||| || |||||||| ||||||||||| Sbjct 3061017 CTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAA 3060958 Query 180131 GAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTGATCAACCACATGA 180190 || |||||| | || || || | ||||| ||| ||||| | ||||| || ||||| Sbjct 3060957 AAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGA 3060898 Query 180191 GTCATTCGTATTCCCAGAAGAAGTTCTGCCAAGAGGTAATGC 180232 | ||||||| || || ||||| ||| | || || || Sbjct 3060897 AAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 3060856 >seq72 Length=1231634 Score = 125 bits (138), Expect = 9e-24 Identities = 197/278 (71%), Gaps = 3/278 (1%) Strand=Plus/Plus Query 179473 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACG 179532 |||||| ||| | || ||||||||| | ||||| || |||| ||| || |||||||| | Sbjct 291130 AGGGGATTTTACT-CGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTCGCTCTCCATG 291188 Query 179533 GTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCT-CGCCTGATTGGT 179591 | || || || || || ||||||||| | | ||||||||||||||| | ||| || Sbjct 291189 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGGTCTG-TTCAA 291247 Query 179592 ATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTC 179651 | | ||||| ||||| ||| | || | |||||| || ||||| || || || ||| Sbjct 291248 TTGCGGCCTTATAATGCAATTTCATTCTTTGGTCCAATCGCTGTTTTTGTTTCCGTATTC 291307 Query 179652 CTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCG 179711 || || ||||| ||||||| || |||||| || || ||| | ||| || || || Sbjct 291308 CTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTCTGGCGTAGCAGCT 291367 Query 179712 ATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAA 179749 || || | ||| | || ||| | || || || || || Sbjct 291368 ATATTTTGATTCATCCTTTTCTTCCAAGGATTTCATAA 291405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606004865550000