Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq15 583 1e-161 seq72 181 1e-40 >seq15 Length=3529114 Score = 583 bits (646), Expect = 1e-161 Identities = 736/1003 (73%), Gaps = 6/1003 (1%) Strand=Plus/Minus Query 180031 TGGACGACTGGCTTAAACGCGACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTC 180090 ||||||||||| | | | ||||| || || ||||| || ||||| || ||| | || Sbjct 3061855 TGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGCCTATTGCTCT 3061796 Query 180091 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTT 180150 |||| ||||||| | || | || |||||| |||| || || ||||||| || || Sbjct 3061795 TTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTT 3061736 Query 180151 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTA-CGGCAGCT 180209 |||| ||||| || | ||| ||||||| | |||||| || ||||||| |||| || Sbjct 3061735 GGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACGGCGGCA 3061677 Query 180210 GTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 180269 || || || |||||| | | | | || ||| | | ||||| ||||| || || | Sbjct 3061676 GTTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACCGGAAGCA 3061617 Query 180270 CAGGGGAATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCAC 180329 || ||| |||| || ||||||||| | ||||| || |||| ||| || |||||||| Sbjct 3061616 CAAGGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTCGCTCTCCAT 3061557 Query 180330 GGTGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAACTGGC-ACGTCTTATTGG 180388 || || || || ||||| || || ||| |||| || |||||||| || | |||| | Sbjct 3061556 GGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGGTCTGTTCAA 3061497 Query 180389 TATCCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATT 180448 | | || ||||| ||||| ||| ||||||||||||| |||||||| ||||| |||||| Sbjct 3061496 T-TGCGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCTGTTTTTGTTTCCGTATT 3061438 Query 180449 TCTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGC 180508 || || || |||||||| || || ||||||||||||| || |||||| |||||||| Sbjct 3061437 CCTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGCAGC 3061378 Query 180509 AATCTTTAGATTCCTACTCTTTCTTC-AGGGTTTCCACAACTGGACCCTCAACCCCTTCC 180567 || ||| ||||| | || ||||||| | || || || || ||||| | |||||||| | Sbjct 3061377 TATATTTCGATTCATCCT-TTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCCTTTC 3061319 Query 180568 ATATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAA 180627 |||||||||||||||| || || |||||| ||| | |||| || || ||||| | | Sbjct 3061318 ATATGATGGGAGTTGCCGGAGTATTAGGTGCAGCTCTCCTATGCGCTATTCATGGGGCTA 3061259 Query 180628 CTGTGGAGAACACACTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATT 180687 |||| || ||||| || | |||||||| || ||||| ||||| || ||| | Sbjct 3061258 CTGTAGAAAACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCGAGCTTTTAACC 3061199 Query 180688 CAACGCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCT 180747 | || |||| ||| |||||||| || |||||||| || |||||||| ||||| || |||| Sbjct 3061198 CCACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCT 3061139 Query 180748 TCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTA 180807 | ||| |||| ||||| || || || ||| | ||||| || ||| | ||||| || || | Sbjct 3061138 TTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCA 3061079 Query 180808 TGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACG 180867 ||| |||||| |||||||| | |||| || ||||| ||||| ||||| || | Sbjct 3061078 CCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATG 3061019 Query 180868 ATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCA 180927 | ||||| || || ||| | ||||| ||||||||||| || ||||| |||||||||| Sbjct 3061018 ACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCA 3060959 Query 180928 AGAACATCCTATTGAATGAAGGACTACGTGCATGGTTGGCACCTGCCGATCAACCACACG 180987 | || || || || || || || | ||||| ||| ||||| || ||||| || || | Sbjct 3060958 AAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATG 3060899 Query 180988 AAAACTTCATCTTCCCTGAAGAAGTTCTACCAAGAGGTAACGC 181030 |||| | || |||||||| || ||||||||| | || ||||| Sbjct 3060898 AAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 3060856 >seq72 Length=1231634 Score = 181 bits (200), Expect = 1e-40 Identities = 209/275 (76%), Gaps = 6/275 (2%) Strand=Plus/Plus Query 180271 AGGGGAATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACG 180330 |||||| ||| | || ||||||||| | ||||| || |||| ||| || |||||||| | Sbjct 291130 AGGGGATTTTACT-CGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTCGCTCTCCATG 291188 Query 180331 GTGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAACTGGC-ACGTCTTATTGGT 180389 | || || || ||||| || || ||| |||| || |||||||| || | |||| | | Sbjct 291189 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGGTCTGTTCAAT 291248 Query 180390 ATCCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTT 180449 | || ||||| ||||| ||| |||||| |||||| |||||||| ||||| |||||| Sbjct 291249 -TGCGGCCTTATAATGCAATTTCATTCTTTGGTCCAATCGCTGTTTTTGTTTCCGTATTC 291307 Query 180450 CTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCA 180509 || || || |||||||| || || ||||||||||||| || || ||| |||||||| Sbjct 291308 CTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTCTGGCGTAGCAGCT 291367 Query 180510 ATCTTTAGATTCCTACTCTTTCTTC--AGGGTTTC 180542 || ||| ||||| | || ||||||| ||| |||| Sbjct 291368 ATATTTTGATTCATCCT-TTTCTTCCAAGGATTTC 291401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610324831800000