Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq12 98.7 1e-15 seq46 96.9 5e-15 seq23 95.1 2e-14 >seq12 Length=3772834 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/226 (70%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | ||||| | ||| | || | ||||| |||| || || Sbjct 2780919 TCCACCTTGATCAACATAACGTGCAGTATCATTGAAAACACGTAGCATAGGAACAAGTCC 2780860 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||| | ||||| ||||| ||||||||||| | || ||||||||| ||| || Sbjct 2780859 GTTAGAAGTCCCATTAGTTCCTCGGATATAACTTCCAGTAGCTCGAATATTATGAATTGA 2780800 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTC---AATGTGTCATA 69926 | ||| |||||||| || |||| | ||| ||| || || | | || ||||| Sbjct 2780799 GATACCGATTCCTCCAGCAGTTTT---GCTTATCGCAGCACATTCCGAAAGAGTATCATA 2780743 Query 69927 TATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || ||||| || ||||||||| ||||| | ||| ||||||||| Sbjct 2780742 AATTCCCTCAATACTATCATCTTTCATGCAGATAAGGAAACAGCTA 2780697 Score = 87.8 bits (96), Expect = 2e-12 Identities = 91/117 (78%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 69082 AGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTT 69141 |||||||| | ||||||||| || ||||| || || || || || ||||| ||| | ||| Sbjct 2782204 AGAATAAAAGTATCTGCCAAGCCTTGAACACCTATTCCAATCGGCCTATGCCTCATGTTT 2782145 Query 69142 GAACTTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197 || |||| || ||| ||| || |||||||||||||| || ||||| || ||||| Sbjct 2782144 GACCTTTTTGCAGTCTC-AATGGGGTAATAATTAATATCAATGATTTTGTTCAGATT 2782089 >seq46 Length=1857289 Score = 96.9 bits (106), Expect = 5e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | || | ||||| | ||| |||| | | ||| |||| ||| ||| Sbjct 1671531 CCACCTTGATCAACATAACGAGCAGTATCATTGAAGACACGTAACATAGGAACAATCCCA 1671472 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || || | ||||||||||| |||||| || || | || || ||||| || ||| Sbjct 1671471 TTTGAGGTTCCATTTGTTCCCCTAATATAGCTACCAGTAGCTCGGATATTGTGAACAGAG 1671412 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| ||||| ||||| || || | |||||| |||| || ||||| || Sbjct 1671411 ACACCAATTCCCCCTGCAGACTTGCTTATGACAGCACATTCCTTCAGAGTATCATAGATT 1671352 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| ||||| |||||| ||||| || ||| |||||||| Sbjct 1671351 CCCTCAATGCTGTCATCTTTCATGCAAATAAGGAAACAGCT 1671311 >seq23 Length=2780208 Score = 95.1 bits (104), Expect = 2e-14 Identities = 104/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 39613 TAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGT 39672 || |||||||||||| || || |||||||| || | || | ||||| || || || Sbjct 1221948 TAGGCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGT 1222007 Query 39673 GAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAA 39731 |||||| ||||| || || ||||| |||||||| || ||||| ||| || || || || | Sbjct 1222008 GAGTCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGGAGCCCGAGA 1222066 Query 39732 AGAAGATGCCTTCTAC 39747 |||||||||| || || Sbjct 1222067 AGAAGATGCCCTCGAC 1222082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686903433525000