Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq165 113 4e-20 seq4 113 4e-20 seq5 105 6e-18 seq49 98.7 8e-16 seq24 91.5 1e-13 seq17 82.4 6e-11 >seq165 Length=58862 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | || | |||| ||| | || || || || || || ||||||||| Sbjct 23326 CCACCGCGGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 23385 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || |||||||| || |||||| | ||||| ||||| || |||||||| Sbjct 23386 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 23445 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||||| |||| | | || | ||||| | || || || Sbjct 23446 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACC 23505 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||||||||| || ||||| ||||| ||||| Sbjct 23506 TCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 23552 >seq4 Length=5694366 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | || | |||| ||| | || || || || || || ||||||||| Sbjct 3329491 CCACCGCGGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 3329432 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || |||||||| || |||||| | ||||| ||||| || |||||||| Sbjct 3329431 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 3329372 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||||| |||| | | || | ||||| | || || || Sbjct 3329371 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACC 3329312 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||||||||| || ||||| ||||| ||||| Sbjct 3329311 TCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 3329265 >seq5 Length=5556497 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| | || | |||| || | ||| || || || || || ||||| ||| Sbjct 4050162 GCCGCCGCGGAGGCGGAGGACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGC 4050103 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || ||||| |||| || ||||| || |||||| | ||||| ||||| || |||||||| Sbjct 4050102 CAGCGTGCGCCCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGG 4050043 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 || ||||| || || | |||| |||| | | | || ||||| | | || || Sbjct 4050042 GACGCCCTCCTTGTCCTGCACCTTGGCCTTCACGTTCGCCACCGTGTCCGACGGCTCCAC 4049983 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||||||||| || ||||| ||||| ||||| Sbjct 4049982 CTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 4049935 >seq49 Length=1823295 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/213 (71%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | |||| |||| |||||||| || || Sbjct 158153 GTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCA 158212 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || ||||||| ||| Sbjct 158213 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 158272 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || || | || || || || || ||||| | ||||| || || || Sbjct 158273 ACGTTGTCAATGGTATCCGAGGACTCCACCTCGAGGGTTATGGTCTTGCCGGTAAGGGTC 158332 Query 27231 TTCACAAAGATTTGCATAGCTGCTAAAAATTTA 27263 || || ||||| ||||| |||| ||| ||||| Sbjct 158333 TTAACGAAGATCTGCAT--CTGC-AAACATTTA 158362 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| | | |||| |||| || ||||| || || Sbjct 157470 GTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCA 157529 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||||||||| || ||||| || | ||||| || || ||||||| ||| Sbjct 157530 GCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 157589 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || ||||| || || || |||| || || || || || Sbjct 157590 ACGTTGTCGATGGTGTCGGAGGACTCAACCTCCAGGGTAATAGTCTTCCCAGTGAGGGTC 157649 Query 27231 TTCACAAAGATTTGCAT 27247 || |||||||| ||||| Sbjct 157650 TTGACAAAGATCTGCAT 157666 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| | | |||| |||| || ||||| || ||| Sbjct 157925 GTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCG 157984 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || |||||| ||| Sbjct 157985 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTC 158044 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | || || || || ||||| || | ||||| || || || Sbjct 158045 ACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGAGTGATGGTCTTGCCAGTAAGGGTC 158104 Query 27231 TTCACAAAGATTTGCATA 27248 || || ||||| |||||| Sbjct 158105 TTGACGAAGATCTGCATA 158122 >seq24 Length=2721981 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||||||||| | || | |||| || | ||| || || || || ||||||||||| Sbjct 300582 GCCTCCGCGGAGACGGAGCACCAGGTGAAGCGTGGATTCCTTCTGGATATTGTAGTCAGC 300523 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | |||| | || |||||||| || |||||| | ||||| ||||| || ||||| || Sbjct 300522 GAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGG 300463 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || |||||| || | | | || | ||||| | || || || Sbjct 300462 GATGCCCTCCTTGTCCTGGATCTTAGCCTTTACGTTGTCGATGGTGTCCGAGGACTCCAC 300403 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | || ||||||| || ||||| ||||| ||||| Sbjct 300402 CTCCAACGTGATGGTCTTCCCCGTCAAGGTCTTCACGAAGATCTGCAT 300355 >seq17 Length=3182705 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || ||||||||| | |||| | || || ||||| || || Sbjct 3005517 GTAGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCCATCCTCCAGCTGCTTGCCA 3005576 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| | ||| || ||||| || | ||||| || || |||||| |||| Sbjct 3005577 GCGAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCTTTC 3005636 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | ||||| || || || || | || || |||| || Sbjct 3005637 ACGTTATCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTCTTTCCAGTCAAGGTC 3005696 Query 27231 TTCACAAAGATTTGCATA 27248 ||||||||||| |||||| Sbjct 3005697 TTCACAAAGATCTGCATA 3005714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424931163195000