Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq58 118 1e-21 seq49 116 5e-21 seq23 105 8e-18 >seq58 Length=1564795 Score = 118 bits (130), Expect = 1e-21 Identities = 217/317 (68%), Gaps = 6/317 (2%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 ||||| |||||||| || || | || ||||| || || || ||||| || ||| | Sbjct 1272671 AAGCCGTCCATCTCCGTCAGCAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTTCCACC- 1272729 Query 11600 ATACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 |||| ||||||| || || |||| || |||||||||||||||||||||||||| Sbjct 1272730 --ACCAAGCCCAGCACCACGCTGTCTGCCGACGGCATCAATCTCATCAATGAAGACAATG 1272787 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 || || || | ||| | || ||||| || | ||||| |||||| ||||| Sbjct 1272788 CAAGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCCCTGACCCTGGAGGCACCGACACCG 1272847 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCC 11776 || || | ||| || || | | || | ||| || ||| || || | || || Sbjct 1272848 ACGAAGAGCTCGACGAACTCGGACGCGGCGCAGGAGAAGAACGGCACGCCGGCCTCCCCG 1272907 Query 11777 GCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCT 11836 |||| ||| || |||||||| ||||| ||||| || ||| ||| |||| ||| || Sbjct 1272908 GCGACGGCACGCGCGAGGAGAGTCTTACCCGTCCCAGGCGGACCGACGAGCAGGCACCCC 1272967 Query 11837 CGGGGGATCTTGGCACC 11853 ||||||||||| || Sbjct 1272968 TTTGGGATCTTGGCTCC 1272984 >seq49 Length=1823295 Score = 116 bits (128), Expect = 5e-21 Identities = 197/284 (69%), Gaps = 6/284 (2%) Strand=Plus/Minus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 ||||| || || || | ||| | || ||| | ||||| | | |||||||| ||| Sbjct 586655 TCAAAGCGTCCAGGTCTAAGTAAAGCAGAATCCAAAATATCAGCTCTGTTAGTGGCAGCA 586596 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 ||||| | || ||||| | ||||| ||||||||||| || || | |||||| | Sbjct 586595 ATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGAAGTTGATTCAGG 586536 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACC---ACCAGCACTGCGTTGCTTGCCCACC 11629 || || || || ||||||||| | ||| ||| | | | |||| | || || Sbjct 586535 GTCTGCTCCCTTTCATCATTTCCACC---ACCGATACCCGTTCCTCTTTGCCTTCCAACA 586479 Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 ||||| || ||||||| || || || || ||| ||| || ||| ||| ||| ||| Sbjct 586478 GCATCGATTTCATCAACAAACACTATGCAAGGTGCATTCTCCTTGGCCTTTTTAAAAAGA 586419 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 || ||||||| ||||| ||||||||||||||||||||||| Sbjct 586418 TCACGAACCCGGGAAGCACCGACACCAACAAACATCTCCACAAA 586375 >seq23 Length=2780208 Score = 105 bits (116), Expect = 8e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || ||||| || || || || || || || |||||| || || |||||||| || Sbjct 1221966 GTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGTCCCGGCATGAGGCC 1222025 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 1222026 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCA 1222085 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || ||||| | ||||| || |||||| Sbjct 1222086 GGCGAACGCGACGAGGCGCTCCGCGAAG 1222113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628027093500000