Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq23 141 1e-28 seq49 111 2e-19 seq58 107 2e-18 >seq23 Length=2780208 Score = 141 bits (156), Expect = 1e-28 Identities = 308/455 (68%), Gaps = 16/455 (4%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || |||||||||||||| || ||||| || | || | ||| |||||| Sbjct 1221667 TACTCGCCGACGCGCTTCTCGAAGAAATTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 1221726 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 | || || ||||| ||| | || | || | ||| | | |||| || || Sbjct 1221727 CAGTCGAACGGGTTGACGACGTTGTATATCTTCTTGTG-TCCCAGCGCCATGAGCAGGCG 1221785 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | |||| |||| ||||||| ||| | || |||||| |||| ||| || Sbjct 1221786 GTCGGCGACGAACTCGATGTACTGGCTCATGAGCACGCCGTTCATGCCGACGAGCGCGCA 1221845 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||||||||| ||| |||| | ||| ||||| || || || ||||| || | Sbjct 1221846 GGGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCGCG 1221905 Query 129967 AATGGTCTCCGTGCCAGGTCTA--TTG---CGCA--AAGTCTTGAAGAGTTCCACGGCAA 130019 | | || ||| ||| | ||| || | | ||| | ||||| ||| | Sbjct 1221906 GACG-----CGGGCCTCGTCGAGCTTGGAGCGGAGGAGGTCGT--AGAGTAGGCAGGCGA 1221958 Query 130020 ACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 130079 | || ||| || |||||||| || |||||||| || || |||||| || || |||| Sbjct 1221959 AGTCGCAGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGTCCCGGCA 1222018 Query 130080 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 130139 |||| || |||||||| | |||||| || || || || ||||| ||||||||||| |||| Sbjct 1222019 TGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCT 1222078 Query 130140 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 | || || |||||||| | ||| ||||| || ||| Sbjct 1222079 CGACGCAGGCGAACGCGACGAGGCGCTCCGCGAAG 1222113 >seq49 Length=1823295 Score = 111 bits (122), Expect = 2e-19 Identities = 225/330 (68%), Gaps = 8/330 (2%) Strand=Plus/Minus Query 14102 ATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCC 14161 |||||| | ||| || || || || |||| ||| || || | ||||| |||||| Sbjct 586619 ATATCAGCTCTGTTAGTGGCAGCAATAACAATGATTCCAGTGTTCCCCTCAAAACCATCC 586560 Query 14162 ATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACC---A 14218 |||||||||| |||||||| | ||| || || | ||||||||| || ||| | Sbjct 586559 ATCTCAGTCAGAAGTTGATTCAGGGTCTGCTCCCTTTCATCATTTCCA---CCACCGATA 586503 Query 14219 CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGA 14278 |||| | | |||| | || || || || |||||||| | || || || || ||| | Sbjct 586502 CCCGTTCCTCTTTGCCTTCCAACAGCATCGATTTCATCAACAAACACTATGCAAGGTGCA 586443 Query 14279 TTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATC 14338 || || ||| || ||| | ||| || || | ||||||||||| ||||||||| Sbjct 586442 TTCTCCTTGGCCTTTTTAAAAAGATCACGAACCCGGGAAGCACCGACACCAACAAACATC 586383 Query 14339 TCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGC 14397 |||||||| | | | | | |||| || ||| || || || ||| || || || || Sbjct 586382 TCCACAAACTCAGATCCCG-ATATTGAGAAGAAAGGCACTCCAGCTTCTCCTGCAATTGC 586324 Query 14398 TCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 |||||| | ||||| |||||||| || Sbjct 586323 CTTGGCGAGCAAAGTCTTACCCGTCCCGGG 586294 >seq58 Length=1564795 Score = 107 bits (118), Expect = 2e-18 Identities = 278/420 (66%), Gaps = 8/420 (2%) Strand=Plus/Plus Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110 ||||||| || |||||||| | ||||| || || || || ||| |||| ||| Sbjct 1272569 ACGGTGACCTGCCGATCAAACCTCCCTGGCCGTAGAAGAGCCGAGTCCAGGACATCGGGC 1272628 Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 14170 | ||| || || |||| || | || ||| | | | | ||||| |||||||| ||| Sbjct 1272629 CTGTTGGTGGCAGCGAGCACGATGACGCCACTGTTGCCTGCGAAGCCGTCCATCTCCGTC 1272688 Query 14171 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA---CCCGCACTG 14227 | || || || ||||| || || | || || || || |||| || |||| Sbjct 1272689 AGCAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTTCCACC---ACCAAGCCCAGCACCA 1272745 Query 14228 CGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGG 14287 || || | |||||||| ||||| ||||| ||||| || || || || || | | Sbjct 1272746 CGCTGTCTGCCGACGGCATCAATCTCATCAATGAAGACAATGCAAGGCGCCTTGGCCTTG 1272805 Query 14288 GCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAA 14347 || || |||| || | || || |||||||||||| || || | ||| || || Sbjct 1272806 GCCTTCTCGAAGAGGTCCCTGACCCTGGAGGCACCGACACCGACGAAGAGCTCGACGAAC 1272865 Query 14348 TTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGG 14407 | || |||| || || ||| || ||| | || || |||| ||| || |||||| Sbjct 1272866 TCGGACGCGGCGCAGGAGAAGAACGGCACGCCGGCCTCCCCGGCGACGGCACGCGCGAGG 1272925 Query 14408 AGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCAC-GTGGGATCCTGGCACC 14466 || ||||| |||||||| || || |||| | |||||| | ||||||| |||| || Sbjct 1272926 AGAGTCTTACCCGTCCCAGGCGGACCGACGAGCA-GGCACCCCTTTGGGATCTTGGCTCC 1272984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618430368475000