Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq23 145 9e-30 seq49 127 2e-24 seq58 100 3e-16 >seq23 Length=2780208 Score = 145 bits (160), Expect = 9e-30 Identities = 121/148 (82%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| ||| |||| || || || || ||||| ||||||||||| || ||||| Sbjct 1222113 CTTCGCGGAGCGCCTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 1222054 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 1222053 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGACTCACCTTCTCCAACGA 1221994 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| || ||| Sbjct 1221993 GCTCATCTCGCGCGACGAGGGCCTGCAC 1221966 >seq49 Length=1823295 Score = 127 bits (140), Expect = 2e-24 Identities = 250/366 (68%), Gaps = 8/366 (2%) Strand=Plus/Minus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 |||||||| || || | ||| | || ||| | |||||| | | || || || || Sbjct 586655 TCAAAGCGTCCAGGTCTAAGTAAAGCAGAATCCAAAATATCAGCTCTGTTAGTGGCAGCA 586596 Query 9587 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9646 || |||| || || || | ||||||||||||||||| |||| |||||| || | Sbjct 586595 ATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGAAGTTGATTCAGG 586536 Query 9647 GTTTGTTCCCGTTCATCATTCGCTGGCATACC---ACCAGCACTGCGTTGCTTTCCCACG 9703 || || |||| ||||||||| | ||| ||| | | | |||| |||| || Sbjct 586535 GTCTGCTCCCTTTCATCATTTCCACC---ACCGATACCCGTTCCTCTTTGCCTTCCAACA 586479 Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 9763 ||||| || ||||||| || || ||||| ||| ||| || || || ||| ||| Sbjct 586478 GCATCGATTTCATCAACAAACACTATGCAAGGTGCATTCTCCTTGGCCTTTTTAAAAAGA 586419 Query 9764 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9823 || || || || || || ||||||||||||||||||||||| | | | | | || Sbjct 586418 TCACGAACCCGGGAAGCACCGACACCAACAAACATCTCCACAAACTCAGATCCCG-ATAT 586360 Query 9824 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9882 || || ||| || || || ||| || ||||| || |||||| | |||||||||||| Sbjct 586359 TGAGAAGAAAGGCACTCCAGCTTCTCCTGCAATTGCCTTGGCGAGCAAAGTCTTACCCGT 586300 Query 9883 ACCTGG 9888 || || Sbjct 586299 CCCGGG 586294 >seq58 Length=1564795 Score = 100 bits (110), Expect = 3e-16 Identities = 218/321 (68%), Gaps = 14/321 (4%) Strand=Plus/Plus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTG 9671 || || |||||||| |||| || |||||||| || || |||| || || || | | Sbjct 1272671 AAGCCGTCCATCTCCGTCAGCAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTTCCACCA 1272730 Query 9672 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 || || |||||| || || | || |||||||||||||||||||||||||| |||| Sbjct 1272731 CCAAGCC--CAGCACCACGCTGTCTGCCGACGGCATCAATCTCATCAATGAAGACAATGC 1272788 Query 9732 ATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 9787 | || ||| || || | || ||||| |||| || | ||| || ||| Sbjct 1272789 AAGGCGCCTTGGCCTTGGCCTTC----TCGAAGAGGTCCCTGACCCTGGAGGCACCGACA 1272844 Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9847 || || || | ||| || || | | |||| || || ||| || || | || Sbjct 1272845 CCGACGAAGAGCTCGACGAACTCGGACGCGGCGCAGGAGAAGAACGGCACGCCGGCCTCC 1272904 Query 9848 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 9907 || || | ||| || ||||| |||||||||||||| || ||| ||| |||| | |||| Sbjct 1272905 CCGGCGACGGCACGCGCGAGGAGAGTCTTACCCGTCCCAGGCGGACCGACGAGCA-GGCA 1272963 Query 9908 CCTC-GTGGAATCTTGGCGCC 9927 || | ||| |||||||| || Sbjct 1272964 CCCCTTTGGGATCTTGGCTCC 1272984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583256243275000