Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq23 212 7e-50 >seq23 Length=2780208 Score = 212 bits (234), Expect = 7e-50 Identities = 574/860 (67%), Gaps = 25/860 (3%) Strand=Plus/Minus Query 59573 GTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGA 59632 ||||||| | | |||| | || ||||| ||| | | || |||||| ||| |||||| Sbjct 1222515 GTACCCGCAGATCTGGGAGTTTTACAAGAAGGCGGTAGCCTCCTTCTGGACCGCCGAGGA 1222456 Query 59633 GATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAG---CTCAATTACGACGAGCAGCA 59689 | | |||||| | | ||| | | |||||| ||||| |||||||| || Sbjct 1222455 GGTGGACCTCTCTGCCGACGCGCGCCACTGGGACGCCGCCCTCAACCCCGACGAGCGCCA 1222396 Query 59690 TTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATAT 59749 ||||||| || |||||||||||||| || || || || ||| |||| || | Sbjct 1222395 TTTCATCTCCCACGTGCTGGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTGGAGAACCT 1222336 Query 59750 AGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCA 59809 | ||| ||| |||||| | |||||||| || | || |||| || || Sbjct 1222335 CGCGTCCCGCTTCATGTCGGACGTCCAGGTCGCCGAGGCGCGCGCCTTTTACGGGTTCCA 1222276 Query 59810 G-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCA 59868 | ||| || |||| |||||||| |||| ||||||||| || | || | || || Sbjct 1222275 GATCGC-CATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTGGAGACGTACATCC 1222217 Query 59869 AGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAAC 59928 || | ||||||| | |||||||| ||||| |||||| ||||| || | Sbjct 1222216 GCGACGGCGCGGAGAAGGACCGCCTGTTCCGCGCCATCGAGACGGTTCCCGCCGTGCGCC 1222157 Query 59929 AAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCATCATTTGCACAACGTCT 59986 || || || |||||||||| ||||| || | | |||| || || | || || Sbjct 1222156 GCAAGGCCGAGTGGGCCATGCGCTGGATCGACGGCGGCGAGCGC--TTCGCGGAGCGCCT 1222099 Query 59987 CATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTG 60046 | | || || || ||||| || || ||||||||||| ||||| ||||| || || ||||| Sbjct 1222098 CGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTG 1222039 Query 60047 GCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGA 60106 |||||| ||||| |||||||||||||| || | |||||||||||||| || || || || Sbjct 1222038 GCTCAAGAAGCGCGGCCTCATGCCGGGACTCACCTTCTCCAACGAGCTCATCTCGCGCGA 1221979 Query 60107 CGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCTATTGGAAAAATGCC 60165 ||||||||| || || || || || | ||||| | || | | | || Sbjct 1221978 CGAGGGCCTGCACTGCGACTTCGC-CTGCCTACTCTACGACCTCC--TCCGCTCCAAGCT 1221922 Query 60166 CTTCCAAG--GATATTCACAAGATTGT-TCAGTGGGCTTGTGAAGTGGAGAGCGAGTTCA 60222 | | | | | | | |||| || | | | | | || | ||| |||||||| Sbjct 1221921 CGACGAGGCCCGCGTCCGCGAGATCGTCGCCGACGCCGT-CGACATCGAGCGCGAGTTCG 1221863 Query 60223 TCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACA 60282 || || ||||| || ||| ||| | || ||| ||| | |||| ||||||| Sbjct 1221862 TCTGCGACGCGCTCCCCTGCGCGCTCGTCGGCATGAACGGCGTGCTCATGAGCCAGTACA 1221803 Query 60283 TTCAGTTTGTCGCGGACCGC---CTCATGGCCCAGTTTGGAGA-AGGACCAATTTACGGC 60338 | |||| ||||| |||||| |||||||| | | ||| | | || || ||| | Sbjct 1221802 TCGAGTTCGTCGCCGACCGCCTGCTCATGGC---GCTGGGACACAAGA-AGATATACAAC 1221747 Query 60339 GTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTT 60398 || ||||| ||||||||||||||| |||||| || | || |||||||| ||||| Sbjct 1221746 GTCGTCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAATTTCTTC 1221687 Query 60399 GAGAAGCGGGTCGGGGATTA 60418 |||||||| ||||| || || Sbjct 1221686 GAGAAGCGCGTCGGCGAGTA 1221667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548520514650000