Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq23 141 1e-28 seq18 98.7 1e-15 seq4 96.9 4e-15 seq14 93.3 5e-14 seq124 89.7 6e-13 seq29 89.7 6e-13 seq11 89.7 6e-13 seq1 89.7 6e-13 seq159 82.4 8e-11 seq13 82.4 8e-11 >seq23 Length=2780208 Score = 141 bits (156), Expect = 1e-28 Identities = 281/405 (69%), Gaps = 12/405 (3%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 || || ||||| || || |||||||| | ||| |||||||| |||||||| || |||| Sbjct 1222009 AGTCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAG 1222068 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG--GAAG 74922 |||||||| ||||| || || || ||||| ||||| | |||||| | || ||| | | Sbjct 1222069 AAGATGCCCTCGACGCAGGCGAACGCGACGAGGCGCTCCGCGAA--GCGC-TCGCCGCCG 1222125 Query 74923 TC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCT 74981 || ||||| | ||||| || || || || || || || || || ||||| || Sbjct 1222126 TCGATCCAGCGCATGGCCCACTCGGCCTTGCGGCGCACGGCGGGAACCGTCTCGATGGCG 1222185 Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTAC 75041 |||| |||| ||||||| || || || | | | || | || || |||||| Sbjct 1222186 CGGAACAGGCGGTCCTTCTCCGCGCCGTCGCGGATGTACGTCTCCAGCAGCAGCGAGTAC 1222245 Query 75042 GTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGC 75100 ||||||| || || |||| || ||| |||| || |||| || | |||||||| || Sbjct 1222246 ATCTCCGAGTGGATGTTCTCGATG-GCGATCTGGAACCCGTAAAAGGCGCGCGCCTCGGC 1222304 Query 75101 AATCTGTACATCC--TTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAG 75158 | ||| || ||| || || | | ||| ||||||| ||||||||||| ||| Sbjct 1222305 GACCTGGACGTCCGACATG-AAGCGGGACG-CGAGGTTCTCCAGCACGATGCCGTCGGAG 1222362 Query 75159 GCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCG 75203 |||||||| || ||||| || ||| || |||||||| ||| Sbjct 1222363 GCGGCGAAGAAGGCCAGCACGTGGGAGATGAAATGGCGCTCGTCG 1222407 >seq18 Length=3162823 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 1927038 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1927097 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||||||||| Sbjct 1927098 TGAGCTACGAAAGCAA 1927113 >seq4 Length=5694366 Score = 96.9 bits (106), Expect = 4e-15 Identities = 69/78 (88%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 |||||||||| |||| | || |||| ||||||||||||||||||||||||||| |||| Sbjct 2183606 ACTGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 2183665 Query 79682 ATTGAGCTACGAAAGCAA 79699 | |||||||||||||||| Sbjct 2183666 ACTGAGCTACGAAAGCAA 2183683 >seq14 Length=3622118 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1267057 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1266998 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||||||||| Sbjct 1266997 TGAGCTACGAAAGCAA 1266982 >seq124 Length=262476 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 48023 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 48082 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 48083 TGAGCTACGAAAGC 48096 >seq29 Length=2487981 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1459533 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1459592 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 1459593 TGAGCTACGAAAGC 1459606 >seq11 Length=3891467 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1701768 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1701709 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 1701708 TGAGCTACGAAAGC 1701695 >seq1 Length=7984747 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 3280588 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 3280529 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 3280528 TGAGCTACGAAAGC 3280515 >seq159 Length=60516 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||| | |||||| ||||| Sbjct 42564 TGCTTTCGTTGAGAGTTGAACTCAGGACCTCCCGCTTACTAAAGCGATGCTCTAACCAAC 42505 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 42504 TGAGCTACGAAAGCA 42490 >seq13 Length=3725751 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||| | |||||| ||||| Sbjct 2438739 TGCTTTCGTTGAGAGTTGAACTCAGGACCTCCCGCTTACTAAAGCGATGCTCTAACCAAC 2438798 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 2438799 TGAGCTACGAAAGCA 2438813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547211724875000