Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq5 95.1 1e-14 seq17 93.3 4e-14 seq57 91.5 1e-13 seq49 87.8 2e-12 >seq5 Length=5556497 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || || || ||||| ||||| Sbjct 4049935 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTGGAGGTGGAGCCGTCG 4049994 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| || | | || || || || | || ||||| || ||| | || || || || Sbjct 4049995 GACACGGTGGCGAACGTGAAGGCCAAGGTGCAGGACAAGGAGGGCGTCCCGCCGGACCAG 4050054 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | |||||| || || |||| ||| | || | ||||||||||| Sbjct 4050055 CAGCGGCTCATCTTCGCCGGGAAGCAGCTGGAGGACGGGCGCACGCTGGCCGATTACAAC 4050114 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || ||||||||||| Sbjct 4050115 ATCCAGAAGGAGTCGAC 4050131 >seq17 Length=3182705 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || || ||| | || || ||||| || || | || Sbjct 3005942 CATGCAGATCTTCGTCAAGACCCTCACTGGGAAGACCATCACCCTTGAGGTAGAGTCATC 3005883 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | || || || || |||||||| || ||||| || || || || Sbjct 3005882 TGACACCATCGACAACGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCGGACCA 3005823 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||| ||||| || | || || | ||| || | |||||||| Sbjct 3005822 GCAGAGGCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGACGTACCCTTGCTGATTACAA 3005763 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || ||||| ||| | ||| |||| | ||| | || ||||| || Sbjct 3005762 CATTCAGAAAGAGTCCACCCTTCATCTGGTGCTCCGTCTTCGTGGTGGTAT 3005712 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/210 (69%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||||||||| || || || ||||||||| | || || || || ||||| | | Sbjct 3114386 CATGCAGATATTC---AAGACCCTCACCGGCAAGACCATCACGCTCGATGTGGAGTCCGC 3114442 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | || || || || || ||||| || ||||| || || || || Sbjct 3114443 TGACACCATTGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 3114502 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||| ||||| || | || ||| | || || | || ||||| Sbjct 3114503 GCAGAGGCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGGCGTACACTTGCTGACTACAA 3114562 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGT 27196 |||||| |||||||| ||| |||| |||| Sbjct 3114563 CATTCAGAAGGAGTCCACCCTACACCTGGT 3114592 >seq57 Length=1649376 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| | || |||||||| || || | || Sbjct 1449422 ATGCAGATCTTCGTCAAGACGTTGACTGGCAAGACCATCACTCTTGAGGTAGAGACTTCG 1449481 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || || ||||| || || || ||||| || || ||||| Sbjct 1449482 GATACTATTGATAATGTTAAGGCCAAGATTCAGGATAAGGAGGGCATCCCCCCAGATCAG 1449541 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || | ||||| | || | | ||||||||| Sbjct 1449542 CAGAGGCTCATTTTTGCTGGCAAGCAGCTAGAAGATGGCCGTACATTGGCTGATTACAAC 1449601 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | || | || ||||| || |||||||||| Sbjct 1449602 ATCCAGAAGGAGTCTACTCTCCACCTTGTGCTGCGTCTGAGGGGTGGCAT 1449651 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| ||||| ||||| |||||| | || || ||||| ||||| ||| Sbjct 1450562 ATGCAAATATTTGTCAAAACGCTGACTGGCAAGACCATCACGCTTGAGGTGGAGAGCTCC 1450621 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| || || || || || ||||| Sbjct 1450622 GACACCATAGATAACGTGAAGGCGAAGATCCAGGACAAGGAGGGAATTCCTCCAGATCAG 1450681 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | |||| || || || || |||| || | ||| | | ||||||||| Sbjct 1450682 CAGAGGCTTATATTTGCTGGGAAGCAGCTGGAGGATGGGCGTACCTTGGCAGATTACAAC 1450741 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || ||||| || || | ||| | || |||| | || |||||| Sbjct 1450742 ATCCAGAAGGAATCCACTCTTCATCTTGTCCTGCGCCTCCGTGGTGGC 1450789 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || || |||||| | || ||| | || || || || Sbjct 1449649 CATGCAGATCTTTGTTAAGACCCTTACAGGCAAGACAATCACTTTGGAGGTTGAGAGCTC 1449708 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | || || || || || ||||| |||||||| || || || || Sbjct 1449709 TGACACAATTGACAATGTTAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGACCA 1449768 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || || || || | ||||| | ||| | | || ||||| Sbjct 1449769 GCAGAGGCTCATCTTTGCTGGGAAGCAGCTCGAAGATGGCCGTACCCTAGCTGACTACAA 1449828 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||||||| | || | || ||||| || ||||||| || Sbjct 1449829 CATACAGAAGGAGTCGACCCTCCACCTTGTACTGCGTCTGAGGGGTGGTAT 1449879 >seq49 Length=1823295 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || || ||| |||| || | || || || | || Sbjct 157210 ATGCAGATCTTTGTCAAGACCCTCACTGGGAAGACTATCACCTTGGAGGTAGAGTCTTCA 157151 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || ||||| || ||||| ||||| || || Sbjct 157150 GACACCATTGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 157091 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| || |||| || | ||| | | || |||||| Sbjct 157090 CAGCGTCTGATTTTTGCAGGCAAGCAGCTGGAGGATGGACGTACCCTGGCGGACTACAAC 157031 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| ||||| || || | || |||| | ||| | || |||||| Sbjct 157030 ATTCAGAAGGAATCCACTCTTCACCTGGTGCTTCGTCTCCGTGGTGGC 156983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434915002200000