Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq15 376 3e-99 seq17 197 2e-45 seq72 107 2e-18 seq100 84.2 3e-11 >seq15 Length=3529114 Score = 376 bits (416), Expect = 3e-99 Identities = 711/1042 (68%), Gaps = 27/1042 (3%) Strand=Plus/Minus Query 190796 TTTGATGTGCTTGATGACTGGTTAAAACGTGATAGATTTGTATTCATAGGTTGGTCTGGT 190855 |||||| | | || ||||||||| | | || | || || || |||| ||||| || Sbjct 3061865 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGC 3061806 Query 190856 CTTATATTATTACCATGTGCTTTCCTATCAATTGGTGGTTGGTTCACAGGAACTACATTT 190915 || | | || || ||||||| | | | || |||||||| ||||| ||||| ||| Sbjct 3061805 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 3061746 Query 190916 GTTACTAGTTGGTATACACATGGAATTGCATCTTCATACCTTGAAGGAGCAAACTTTTTG 190975 || ||| ||||||||| |||||| | || ||| || | ||||| || || || Sbjct 3061745 GTAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGCAATTTCTTA 3061686 Query 190976 ACAGCAGCAGTATCCACACCTGGTGATGCTATGGGTCATAGTTTATTATTCTTATGGGGT 191035 || || ||||| ||||| |||| | || | | | || ||| || | ||||||| Sbjct 3061685 ACGGCGGCAGTTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGA 3061626 Query 191036 CCAGAGGCACAAGGTTCATTTGTTCGTTGGTTACAAATTGGTGGACTTTGGAACTTTGTA 191095 || || |||||||| ||| |||||||| ||| | || || || |||| ||||| Sbjct 3061625 CCGGAAGCACAAGGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTC 3061566 Query 191096 GCACTTCATGGTGTATTTGGTCTCATAGGATTCATGTTACGTCAGTTTGAAATTGC-AGG 191154 || || ||||| | |||| || ||||| |||||||||||||| |||||| |||| ||| Sbjct 3061565 GCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGG 3061506 Query 191155 ATTGGTGGGTATTAGACCTTACAATGCTCTTGCTTTTTCTGCTGTCATAGCAGTTTTCAC 191214 || | | | | ||||| ||||| || | || |||| | || || ||||| Sbjct 3061505 TCTGTTCAAT-TGCGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCTGTTTTTGT 3061447 Query 191215 AAGTGTATTCTTAATCTATCCACTTGGTCAGCACAGTTGGTTCTTTGCACCTTCATTTGG 191274 |||||| | || |||||||| || || |||||||||||||||| ||||| Sbjct 3061446 TTCCGTATTCCTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTTTGG 3061387 Query 191275 AGTTGCAGCAATCTTTAGATATATTCTATTCATTCAAGGTTTCCACAATATTACACTCAA 191334 || ||||| || ||| ||| || || ||| | ||||| || || ||| || | || Sbjct 3061386 CGTAGCAGCTATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAA 3061327 Query 191335 CCCTTTCCACATGATGGGAGTTGCAGGTATTCTAGGTGGAGCATTACTATGTGCCATTCA 191394 ||| || || |||||||||||||| || | |||||| ||| | ||||| || ||||| Sbjct 3061326 CCCCTTTCATATGATGGGAGTTGCCGGAGTATTAGGTGCAGCTCTCCTATGCGCTATTCA 3061267 Query 191395 TGGTGCTACAGTACAGAACACCTTGTATGAGGACTCAAGCATCTATACAGATGGTCAAGT 191454 ||| ||||| ||| | ||||| | ||| || | ||||||| | | Sbjct 3061266 TGGGGCTACTGTAGAAAACAC--TCTAT------TCGA----------AGATGGTGATGG 3061225 Query 191455 TCAAAGTACAACCTTTAGAGCATTTGATCCAACACAGGATGAGGAAACTTATTCTATGAT 191514 | || | ||||| |||| ||| | || || || | || ||||||||||| ||| | Sbjct 3061224 TGCAAAT---ACCTTCCGAGCTTTTAACCCCACTCAAGCGGAAGAAACTTATTCAATGGT 3061168 Query 191515 CACTGCAAACAGATTCTGGTCACAGATATTTGGTATTGCATTCTCTAACAAAAGATTTCT 191574 ||| || ||| | || ||||| || || |||||| |||| || || || ||| | | | Sbjct 3061167 CACCGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTT 3061108 Query 191575 ACACTTCTTGATGTTGTTTGTTCCTGTAATGGGAATGTGGACATCATCAATAGGTATTGT 191634 ||| ||||| ||| | ||||| || || | || | |||| | || || | || Sbjct 3061107 ACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGT 3061048 Query 191635 AGGTCTTGCACTTAACTTAAGAGCATATGATTTTGTATCTCAAGAGATAAGAGCAGCAGA 191694 || || || || ||| || | || ||||| || || || || || || | ||||| || Sbjct 3061047 TGGCCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGA 3060988 Query 191695 AGACCCAGAGTTTGAAACCTTCTATACTAAGAACATTCTTCTTAATGAAGGTATGAGAGC 191754 ||| || || ||||| || ||||| || || || |||||| | || || ||||| | || Sbjct 3060987 AGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGC 3060928 Query 191755 ATGGATGTC--TTCAGTAGACCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTA 191812 |||||| | |||| || || |||||||| || || | ||||| ||||| |||||| Sbjct 3060927 GTGGATGGCAGCTCAG--GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTA 3060870 Query 191813 CCTAGAGGAAATGCATTGTAAT 191834 || | ||||| || | |||| Sbjct 3060869 CCACGTGGAAACGCTCTTTAAT 3060848 Score = 217 bits (240), Expect = 2e-51 Identities = 195/245 (80%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 182485 AATGTCTCACGCCGTTAAAATATATGATACTTGCATTGGATGCACACAATGTGTGAAGGC 182544 |||||| || | || ||||| |||||||| || || |||||||| |||||||| || Sbjct 3084474 AATGTCACATTCTGTAAAAATTTATGATACATGTATAGGATGCACTCAATGTGTACGAGC 3084415 Query 182545 TTGTCCATTGGATGTATTAGAAATGGTTCCTTGGGATGGGTGCAAAGCAAAGCAAATTGC 182604 ||||||| ||||||||||||||| | ||||||||||| || ||||| ||||||||||| Sbjct 3084414 TTGTCCAACAGATGTATTAGAAATGATACCTTGGGATGGATGTAAAGCCAAGCAAATTGC 3084355 Query 182605 TTCCTCACCTAGAACTGAGGATTGTGTAGGATGTAAGAGATGTGAAACAGCATGTCCTAC 182664 ||| | || ||||| || |||||||| || ||||||||||||||| |||| || || || Sbjct 3084354 TTCTGCGCCGAGAACCGAAGATTGTGTGGGTTGTAAGAGATGTGAATCAGCCTGCCCAAC 3084295 Query 182665 AGACTTTTTAAGTATTCGTGTTTACTTGGGTGCAGAAACCACAAGAAGCATGGGTCTAGC 182724 ||| ||||||||| | || ||||| || || | ||||| || | ||||||| |||| | Sbjct 3084294 AGATTTTTTAAGTGTCCGCGTTTATTTAGGGCCTGAAACAACCCGCAGCATGGCTCTATC 3084235 Query 182725 ATATT 182729 |||| Sbjct 3084234 TTATT 3084230 Score = 212 bits (234), Expect = 8e-50 Identities = 194/245 (79%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 182485 AATGTCTCACGCCGTTAAAATATATGATACTTGCATTGGATGCACACAATGTGTGAAGGC 182544 |||||| || | || ||||| |||||||| || || |||||||| |||| ||| || Sbjct 3092785 AATGTCACATTCTGTAAAAATTTATGATACATGTATAGGATGCACTCAATATGTACGAGC 3092726 Query 182545 TTGTCCATTGGATGTATTAGAAATGGTTCCTTGGGATGGGTGCAAAGCAAAGCAAATTGC 182604 ||||||| ||||||||||||||| | ||||||||||| || ||||| ||||||||||| Sbjct 3092725 TTGTCCAACAGATGTATTAGAAATGATACCTTGGGATGGATGTAAAGCCAAGCAAATTGC 3092666 Query 182605 TTCCTCACCTAGAACTGAGGATTGTGTAGGATGTAAGAGATGTGAAACAGCATGTCCTAC 182664 ||| | || ||||| || |||||||| || ||||||||||||||| |||| || || || Sbjct 3092665 TTCTGCGCCGAGAACCGAAGATTGTGTGGGTTGTAAGAGATGTGAATCAGCCTGCCCAAC 3092606 Query 182665 AGACTTTTTAAGTATTCGTGTTTACTTGGGTGCAGAAACCACAAGAAGCATGGGTCTAGC 182724 ||| ||||||||| | || ||||| || || | ||||| || | ||||||| |||| | Sbjct 3092605 AGATTTTTTAAGTGTCCGCGTTTATTTAGGGCCTGAAACAACCCGCAGCATGGCTCTATC 3092546 Query 182725 ATATT 182729 |||| Sbjct 3092545 TTATT 3092541 Score = 212 bits (234), Expect = 8e-50 Identities = 194/245 (79%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 182485 AATGTCTCACGCCGTTAAAATATATGATACTTGCATTGGATGCACACAATGTGTGAAGGC 182544 |||||| || | || ||||| |||||||| || || |||||||| |||| ||| || Sbjct 3101098 AATGTCACATTCTGTAAAAATTTATGATACATGTATAGGATGCACTCAATATGTACGAGC 3101039 Query 182545 TTGTCCATTGGATGTATTAGAAATGGTTCCTTGGGATGGGTGCAAAGCAAAGCAAATTGC 182604 ||||||| ||||||||||||||| | ||||||||||| || ||||| ||||||||||| Sbjct 3101038 TTGTCCAACAGATGTATTAGAAATGATACCTTGGGATGGATGTAAAGCCAAGCAAATTGC 3100979 Query 182605 TTCCTCACCTAGAACTGAGGATTGTGTAGGATGTAAGAGATGTGAAACAGCATGTCCTAC 182664 ||| | || ||||| || |||||||| || ||||||||||||||| |||| || || || Sbjct 3100978 TTCTGCGCCGAGAACCGAAGATTGTGTGGGTTGTAAGAGATGTGAATCAGCCTGCCCAAC 3100919 Query 182665 AGACTTTTTAAGTATTCGTGTTTACTTGGGTGCAGAAACCACAAGAAGCATGGGTCTAGC 182724 ||| ||||||||| | || ||||| || || | ||||| || | ||||||| |||| | Sbjct 3100918 AGATTTTTTAAGTGTCCGCGTTTATTTAGGGCCTGAAACAACCCGCAGCATGGCTCTATC 3100859 Query 182725 ATATT 182729 |||| Sbjct 3100858 TTATT 3100854 >seq17 Length=3182705 Score = 197 bits (218), Expect = 2e-45 Identities = 397/582 (68%), Gaps = 9/582 (2%) Strand=Plus/Minus Query 186538 TCATGCTATTGCACTTGGATTACATACTACAACTTTAATCCTAGTCAAGGGTGCATTAGA 186597 |||||||||| | || || || ||||| || | | || |||| |||||||| ||||| Sbjct 1258698 TCATGCTATTTCTCTAGGTTTGCATACAACTAAATAGATTTTAGTAAAGGGTGCTTTAGA 1258639 Query 186598 TGCTAGAGGTTCAAAACTCATACCAGATAAGAAAGATTTAGGATATTCATTCCCTTGTGA 186657 ||| | ||||||||| | || | ||||| || ||||| || ||| || |||||||| Sbjct 1258638 TGCACGTGGTTCAAAATTAATGCTGGATAA-AAGGATTTCGGGTATATTTTTCCTTGTGA 1258580 Query 186658 TGGTCCAGGCAGAGGTGGTACTTGTGATAGTTCTGGTTGGGATGCTTTCTATCTCTCTGT 186717 || | ||| | |||||||| |||||| ||||| |||||| || ||| | || Sbjct 1258579 CGGCCTAGGGTGCAGTGGTACTCGTGATATTTCTGCTTGGGACAGATTTTATTTGGTAGT 1258520 Query 186718 GTTCTGGGCATTCAATACAATAGCATGGGCAGATTTTTATT-GGCACTGGAAGAACCTTG 186776 |||||| || ||| || | |||| |||||||| |||| ||||| || Sbjct 1258519 TTTCTGGATGTTAAATGTCATTGGATGGCTTATTTTTTATTTGGCATTGGAAACACACCA 1258460 Query 186777 CTAGTTGGCAAGGTAATCAGGCACAATTCAATACATCAGGAACATATCTTATGGGTTGGT 186836 | ||||| || || |||| || ||| ||| || ||| | | ||| | | Sbjct 1258459 CATTATGGCAGGGAAAAGTTTCACATTTTAATGAATCTACCACTTATTTGACGGGATTTT 1258400 Query 186837 TCAGAGATTATCTCTGGGCGAATAGTGCGCCTGTAATCACAGGGTACACACCATTTGGTA 186896 | || ||||| || ||| || | | | | |||| ||||| | ||||| | Sbjct 1258399 T-AGCGATTACCTATGGTTAAACTCTTCACGGCTTATCAATGGGTATAATTGTTTTGGGA 1258341 Query 186897 TGAATAATCTCTCTGTATGGGCATGGATGTTCTTGTTTGGTCATTTAGTTTGGGCAACAG 186956 ||| |||| | || ||||||| ||||||||| ||||| ||| | |||||||| | | Sbjct 1258340 TGAGTAATTTATCGTTATGGGCCCAGATGTTCTTATTTGGACATCTTGTTTGGGCTATTG 1258281 Query 186957 GATTTATGTTCCTTATTTCTTGGAGAGGTTATTGGCAAGAGTTAATTGAGACTCTTGCTT 187016 ||| || || | |||||| | || |||||||| || |||||||||||| | || | Sbjct 1258280 AATT-ATCCTCTTAATTTCTCGTGGA---TATTGGCAGGAATTAATTGAGACTTTAGCAT 1258225 Query 187017 GGGCACATCAAAGAACTCCAATAGCAAATATAGCAGGTTGGAGAGATAAACCAGTGGCAC 187076 |||| ||| || | || || | || ||| || | |||| |||||| || |||| | Sbjct 1258224 GGGCCCATGAACGCACACCTTTGGCTAATTTAATTCGCTGGACAGATAAGCCCATGGCTC 1258165 Query 187077 TTTCTATTGTTCAAGCAAGACTAGTTGGTTTA--TCACATTT 187116 |||| ||||| ||| ||||| ||||||| ||| |||| ||| Sbjct 1258164 TTTCCATTGTGCAATCAAGATTAGTTGGATTAATTCACTTTT 1258123 >seq72 Length=1231634 Score = 107 bits (118), Expect = 2e-18 Identities = 185/266 (70%), Gaps = 2/266 (1%) Strand=Plus/Plus Query 191059 TCGTTGGTTACAAATTGGTGGACTTTGGAACTTTGTAGCACTTCATGGTGTATTTGGTCT 191118 |||||||| ||| | || || || |||| ||||| || || ||||| | |||| || Sbjct 291142 TCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTGCACT 291201 Query 191119 CATAGGATTCATGTTACGTCAGTTTGAAATTGC-AGGATTGGTGGGTATTAGACCTTACA 191177 ||||| |||||||||||||| |||||| |||| ||| || | | | | ||||| | Sbjct 291202 AATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGGTCTGTTCAAT-TGCGGCCTTATA 291260 Query 191178 ATGCTCTTGCTTTTTCTGCTGTCATAGCAGTTTTCACAAGTGTATTCTTAATCTATCCAC 191237 |||| || | || | || | || || ||||| |||||| | || ||||||| Sbjct 291261 ATGCAATTTCATTCTTTGGTCCAATCGCTGTTTTTGTTTCCGTATTCCTTATTTATCCAC 291320 Query 191238 TTGGTCAGCACAGTTGGTTCTTTGCACCTTCATTTGGAGTTGCAGCAATCTTTAGATATA 191297 | || || |||||||||||||||| | ||| || ||||| || ||| ||| | Sbjct 291321 TGGGACAATCTGGTTGGTTCTTTGCACCGAGTTCTGGCGTAGCAGCTATATTTTGATTCA 291380 Query 191298 TTCTATTCATTCAAGGTTTCCACAAT 191323 | || ||| | ||||| || || ||| Sbjct 291381 TCCTTTTCTTCCAAGGATTTCATAAT 291406 >seq100 Length=558633 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 188637 ACCTGTCACAGTTCAGTATCCTTATGAAAAATTAATACCCTCAGAGAGATATAGAGGGAG 188696 |||||| || |||| || ||||||||||||| ||| | |||| | | | | ||| | Sbjct 457053 ACCTGTAACGATTCACTACCCTTATGAAAAATCAATTACACGAGAGCGTTTTCGGGGGCG 457112 Query 188697 GATACACTATGAGTTTGATAAATGTATTGCTTGTGAAGTATGTG 188740 || ||| ||| |||||| |||||||||||||||||||||||| Sbjct 457113 AATGGACTTTGAATTTGATGAATGTATTGCTTGTGAAGTATGTG 457156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631422266975000