Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq5 116 3e-21 seq165 102 7e-17 seq4 102 7e-17 seq49 98.7 9e-16 seq24 91.5 1e-13 >seq5 Length=5556497 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || ||||| ||| || || || || |||||||| || || || |||| || Sbjct 4050143 ACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCCAGCGTGCGCCCGTCCTCC 4050084 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| || || || || || || ||||||||||| | || |||| ||| |||||| Sbjct 4050083 AGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGACGCCCTCCTTGTCCTGC 4050024 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 | || || | |||||||||| || || |||||| |||| |||||| | || Sbjct 4050023 ACCTTGGCCTTCACGTTCGCCACCGTGTCCGACGGCTCCACCTCCAGCGTGATCGTCTTG 4049964 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 ||||||||||| || || ||||| |||||||| Sbjct 4049963 CCCGTCAGCGTCTTCACGAAGATCTGCATCTT 4049932 >seq165 Length=58862 Score = 102 bits (112), Expect = 7e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| ||| || ||| ||| || || || || || ||||| || || || | Sbjct 23337 GCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCC 23396 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| || || || || ||||||||||| | || | || ||| || Sbjct 23397 ATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTT 23456 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || || | ||| | | | || || |||||||| |||| ||||| Sbjct 23457 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGA 23515 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | || |||||||| || || || ||||| |||||||| Sbjct 23516 TGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 23555 >seq4 Length=5694366 Score = 102 bits (112), Expect = 7e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| ||| || ||| ||| || || || || || ||||| || || || | Sbjct 3329480 GCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCC 3329421 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| || || || || ||||||||||| | || | || ||| || Sbjct 3329420 ATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTT 3329361 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || || | ||| | | | || || |||||||| |||| ||||| Sbjct 3329360 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGA 3329302 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | || |||||||| || || || ||||| |||||||| Sbjct 3329301 TGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 3329262 >seq49 Length=1823295 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || ||| ||| || || || || || |||||||| || || |||| || Sbjct 158140 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTC 158199 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || |||||||||||||| | ||| | || ||| |||||| Sbjct 158200 GAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 158259 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || || | ||| | | | ||||| |||||||| || | || || | | Sbjct 158260 GATCTTGGCCTTCA-CGTTGTCAATGGTATCCGAGGACTCCACCTCGAGGGTTATGGTCT 158318 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || || || || ||||| ||||| ||||||| Sbjct 158319 TGCCGGTAAGGGTCTTAACGAAGATCTGCATCT 158351 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || || ||| ||| || || || || || || || || || || |||| ||| Sbjct 157458 ACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTCA 157517 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| ||||| || |||||||||||||| | ||| | || ||| |||||| | Sbjct 157518 AGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 157577 Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || || || | ||| | | | || ||| ||||| || |||| || ||| | || Sbjct 157578 ATCTTGGCCTTCA-CGTTGTCGATGGTGTCGGAGGACTCAACCTCCAGGGTAATAGTCTT 157636 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || || |||||||| ||||| Sbjct 157637 CCCAGTGAGGGTCTTGACAAAGATCTGCAT 157666 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || ||| || || || || || || || || || || ||| | || || Sbjct 157001 CACCAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGCCAGGGTACGTCCATCCTC 157060 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCA 39193 ||||| ||||| ||||| || ||||||||||||| ||||||| | || ||| |||||| Sbjct 157061 CAGCTGCTTGCCTGCAAAAATCAGACGCTGCTGGTCCGGTGGG-ATGCCCTCCTTGTCCT 157119 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| ||| || | | | | || || ||||| || |||| |||||| | | Sbjct 157120 GGATCTTCGCCTTCACATTGTCAATGGTGTCTGAAGACTCTACCTCCAAGGTGATAGTCT 157179 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || || |||||||| ||||| Sbjct 157180 TCCCAGTGAGGGTCTTGACAAAGATCTGCAT 157210 >seq24 Length=2721981 Score = 91.5 bits (100), Expect = 1e-13 Identities = 168/241 (70%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 39049 TTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTA 39108 || ||| |||||| | | || | ||||| || |||||| || || || ||||| Sbjct 300590 TTCTTCGCGCCTCCGCGGAGACGGAGCACCAGGTGAAGCGTGGATTCCTTCTGGATATTG 300531 Query 39109 TAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGG 39168 || || || || || || | || || ||||| || || || || || || ||||||||| Sbjct 300530 TAGTCAGCGAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGG 300471 Query 39169 T-CGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGC 39226 | ||||||| | || ||| |||||| ||| || || | ||| | | | || || Sbjct 300470 TCCGGTGGG-ATGCCCTCCTTGTCCTGGATCTTAGCCTTTA-CGTTGTCGATGGTGTCCG 300413 Query 39227 TCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 |||||||| |||| |||||| | || ||||||| || || || ||||| ||||||| Sbjct 300412 AGGACTCCACCTCCAACGTGATGGTCTTCCCCGTCAAGGTCTTCACGAAGATCTGCATCT 300353 Query 39287 T 39287 | Sbjct 300352 T 300352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429542328070625