Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq17 95.1 8e-15 seq5 93.3 3e-14 seq49 91.5 1e-13 seq57 89.7 3e-13 >seq17 Length=3182705 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || |||||||| || || || ||||| || || || || ||| | Sbjct 3006625 ATGCAGATTTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCCTCT 3006566 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || ||| | || || || || Sbjct 3006565 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 3006506 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || |||||||| || ||||| |||| ||||| | | || |||||| Sbjct 3006505 CAGAGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGCACCCTGGCTGACTACAAC 3006446 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 3006445 ATCCAGAAGGAGTCCAC 3006429 >seq5 Length=5556497 Score = 93.3 bits (102), Expect = 3e-14 Identities = 144/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || || || ||||| || |||||||| || || || || | Sbjct 4049932 AAGATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTGGAGGTGGAGCCG 4049991 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTG-ACAAAGAAGGTGTACCGCCAG 23725 ||||||| || | || | || | || ||| | |||| || || || ||||| | Sbjct 4049992 TCGGACACGGTGGCGAACGTGAAGGCCAAGG--TGCAGGACAAGGAGGGCGTCCCGCCGG 4050049 Query 23726 ATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATT 23785 | || ||||| | || || ||||| || || ||||| |||| ||||| | | ||||| Sbjct 4050050 ACCAGCAGCGGCTCATCTTCGCCGGGAAGCAGCTGGAGGACGGGCGCACGCTGGCCGATT 4050109 Query 23786 ACAACATACAAAAAGAGTCCAC 23807 ||||||| || || ||||| || Sbjct 4050110 ACAACATCCAGAAGGAGTCGAC 4050131 >seq49 Length=1823295 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/197 (71%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| || || || || ||||| || || || || ||| || Sbjct 157893 ATGCAGATTTTCGTCAAGACCCTTACTGGCAAGACCATCACCCTTGAGGTGGAGTCCTCG 157834 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || ||| ||||| || || | || || || || Sbjct 157833 GACACCATCGACAACGTGAAGGCCAAGATTCAGGACAAGGAGGGCAT-CCCCCGGACCAG 157775 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || |||||||| || || || || | ||||| | | || |||||| Sbjct 157774 CAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCTGACTACAAC 157715 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 157714 ATCCAGAAGGAGTCCAC 157698 >seq57 Length=1649376 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || || || || |||||||| || || || | || Sbjct 1449422 ATGCAGATCTTCGTCAAGACGTTGACTGGCAAGACCATCACTCTTGAGGTAGAGACTTCG 1449481 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| |||| | || | || || || || || | || |||||||| Sbjct 1449482 GATACTATTGATAATGTTAAGGCCAAGA-TTCAGGATAAGGAGGGCATCCCCCCAGATCA 1449540 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || || ||||| | || || || | |||||||| Sbjct 1449541 GCAGAGGCTCATTTTTGCTGGCAAGCAGCTAGAAGATGGCCGTACATTGGCTGATTACAA 1449600 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 1449601 CATCCAGAAGGAGTCTAC 1449618 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| ||||| || || || || |||||| | || ||||| | | Sbjct 1449650 ATGCAGATCTTTGTTAAGACCCTTACAGGCAAGACAATCACTTTGGAGGTTGAGAGCTCT 1449709 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | || | | ||||| ||||| | || || || || Sbjct 1449710 GACACAATTGACAATGTTAAGGCCAAGA-TCCAGGACAAGGAAGGCATCCCTCCGGACCA 1449768 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || || || ||||| | || || ||| || ||||| Sbjct 1449769 GCAGAGGCTCATCTTTGCTGGGAAGCAGCTCGAAGATGGCCGTACCCTAGCTGACTACAA 1449828 Query 23790 CATACAAAAAGAGTCCAC 23807 |||||| || ||||| || Sbjct 1449829 CATACAGAAGGAGTCGAC 1449846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338007025317500