Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq12 100 4e-16 seq46 95.1 2e-14 >seq12 Length=3772834 Score = 100 bits (110), Expect = 4e-16 Identities = 158/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | ||||| | ||| |||| | | ||| |||| || ||| Sbjct 2780918 CCACCTTGATCAACATAACGTGCAGTATCATTGAAAACACGTAGCATAGGAACAAGTCCG 2780859 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||||| || ||||| ||||| |||||||||||| || ||||||||| ||| || Sbjct 2780858 TTAGAAGTCCCATTAGTTCCTCGGATATAACTTCCAGTAGCTCGAATATTATGAATTGAG 2780799 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTC---AATGTGTCATAG 76930 | || |||||||| || |||| | ||| ||| | || | | || ||||| Sbjct 2780798 ATACCGATTCCTCCAGCAGTTTT---GCTTATCGCAGCACATTCCGAAAGAGTATCATAA 2780742 Query 76931 ATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || ||||| ||||||||||| ||||| | ||| ||||||||| Sbjct 2780741 ATTCCCTCAATACTATCATCTTTCATGCAGATAAGGAAACAGCTA 2780697 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 76522 AAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCA 76581 ||| || |||||||| |||| | | ||| ||| |||||||||||| | || |||||| Sbjct 2781397 AAACTCTTCTCCCCAGCAATCAGCTAGACCTGGAGCTTCATTCGGACAAAACAGTGACCA 2781338 Query 76582 CTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAG 76641 || |||| ||| |||| | ||| || |||||||| |||||||||||| ||| || Sbjct 2781337 CTTTCCATTGAGCTTTACCCTCTCCATGAATAGATCAGGAATCCATAGAGCATAAAAAAG 2781278 Query 76642 ATCTC 76646 ||||| Sbjct 2781277 ATCTC 2781273 >seq46 Length=1857289 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 76493 TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCA 76552 ||||| ||||||| | || || ||||| || || ||||| |||| |||| || Sbjct 1672228 TCTCTCTCATATTTCTTGTACAAATTCTCAAACTCTTCACCCCAGCAATCAGCCAACCCT 1672169 Query 76553 GGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAG 76612 ||| ||||||||||||| | ||||||||| || |||| | || |||| || ||| || Sbjct 1672168 GGAGATTCATTCGGACAAAACAATGACCATTCTCCATTATTCTGGACCCTTTGCATGAAC 1672109 Query 76613 AGATCAGGTATCCATAGAGCAATAAATAGATC 76644 |||||||| | |||||| ||| || ||||| Sbjct 1672108 AGATCAGGAACCCATAGTGCATAGAAAAGATC 1672077 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | ||||| | ||| | || | ||||| |||| ||| || Sbjct 1671531 CCACCTTGATCAACATAACGAGCAGTATCATTGAAGACACGTAACATAGGAACAATCCCA 1671472 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || || ||||||||||| |||||| || ||| || || ||||| || ||| Sbjct 1671471 TTTGAGGTTCCATTTGTTCCCCTAATATAGCTACCAGTAGCTCGGATATTGTGAACAGAG 1671412 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || ||||| ||||| || || | |||||| |||| || |||||||| Sbjct 1671411 ACACCAATTCCCCCTGCAGACTTGCTTATGACAGCACATTCCTTCAGAGTATCATAGATT 1671352 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| || || ||||| ||||| || ||| |||||||| Sbjct 1671351 CCCTCAATGCTGTCATCTTTCATGCAAATAAGGAAACAGCT 1671311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712928830200000