Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq15 533 2e-146 seq72 143 3e-29 seq113 93.3 5e-14 >seq15 Length=3529114 Score = 533 bits (590), Expect = 2e-146 Identities = 722/1004 (72%), Gaps = 2/1004 (0%) Strand=Plus/Minus Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030 |||| |||||| | | | ||||| || || ||||| || ||||| || || | || | Sbjct 3061855 TGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGCCTATTGCTCT 3061796 Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090 |||| ||||||| | || | || || ||| |||| || || || ||||| || | Sbjct 3061795 TTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTT 3061736 Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAG 186150 |||||||||| || ||||| ||| || | || ||| ||||| | ||||| |||| Sbjct 3061735 GGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGCAATTTCTTAACGGCGGCAG 3061676 Query 186151 TGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 186210 | || || |||||| | | | | || ||| | | ||||| ||||| || || | | Sbjct 3061675 TTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACCGGAAGCAC 3061616 Query 186211 AAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 186270 |||| ||| | | || |||| |||| | ||||| || |||| |||||| || ||||| | Sbjct 3061615 AAGGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTCGCTCTCCATG 3061556 Query 186271 GAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCG-TCTCGTAGGT 186329 | || ||||| || |||||||||||| | || || |||||| | | | ||| | | Sbjct 3061555 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGGTCTGTTCAAT 3061496 Query 186330 ATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTC 186389 | || || || ||||| ||| | || |||||||| |||||||| |||||| |||||| Sbjct 3061495 -TGCGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCTGTTTTTGTTTCCGTATTC 3061437 Query 186390 CTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCA 186449 || || || || || ||||| || |||||||| || || ||||| || ||||| Sbjct 3061436 CTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGCAGCT 3061377 Query 186450 ATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCAC 186509 || ||| ||||| | | ||| |||||||||| || || ||||||||||| || || || Sbjct 3061376 ATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCCTTTCAT 3061317 Query 186510 ATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACT 186569 |||||||| || || || | | |||| ||||| || | || || ||||| | |||| Sbjct 3061316 ATGATGGGAGTTGCCGGAGTATTAGGTGCAGCTCTCCTATGCGCTATTCATGGGGCTACT 3061257 Query 186570 GTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATACG 186629 |||||||| ||||| | |||||||| || ||||| || ||| ||| || | | Sbjct 3061256 GTAGAAAACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCGAGCTTTTAACCCC 3061197 Query 186630 ACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTC 186689 || |||| |||||||| ||||| |||||||| || ||| | || ||||| || ||||| Sbjct 3061196 ACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTT 3061137 Query 186690 GGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTATG 186749 || |||| ||| |||||| |||||| | |||||||| ||||| ||||| || || | Sbjct 3061136 GGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACC 3061077 Query 186750 GGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGAC 186809 ||| | |||| | | |||||| | |||| || ||||| ||||| ||||| |||||| Sbjct 3061076 GGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGAC 3061017 Query 186810 TTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAG 186869 || || ||||| | | ||||| || |||||||| || ||||| ||||| ||||| Sbjct 3061016 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAA 3060957 Query 186870 AATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGAA 186929 ||||| || || || || ||| | ||||| ||||||||| | |||||| || |||||| Sbjct 3060956 AATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAA 3060897 Query 186930 AACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 || || |||| ||||| || || | ||| | || |||||||| Sbjct 3060896 AATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 3060853 >seq72 Length=1231634 Score = 143 bits (158), Expect = 3e-29 Identities = 200/278 (72%), Gaps = 2/278 (1%) Strand=Plus/Plus Query 186211 AAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 186270 |||| ||| | | || |||| |||| | ||||| || |||| |||||| || ||||| | Sbjct 291129 AAGGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTCGCTCTCCATG 291188 Query 186271 GAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGT-CGTCTCGTAGGT 186329 | || ||||| || |||||||||||| | || || |||||| | | |||| || Sbjct 291189 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGGTCT-GTTCAA 291247 Query 186330 ATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTC 186389 | || || || ||||| ||| | || | |||||| |||||||| |||||| |||||| Sbjct 291248 TTGCGGCCTTATAATGCAATTTCATTCTTTGGTCCAATCGCTGTTTTTGTTTCCGTATTC 291307 Query 186390 CTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCA 186449 || || || || || ||||| || |||||||| || || | ||| || ||||| Sbjct 291308 CTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTCTGGCGTAGCAGCT 291367 Query 186450 ATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAA 186487 || ||| ||||| | | ||| |||||||||| || || Sbjct 291368 ATATTTTGATTCATCCTTTTCTTCCAAGGATTTCATAA 291405 >seq113 Length=353742 Score = 93.3 bits (102), Expect = 5e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 171000 TATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGGT 171059 || || |||||||||||||| || || | || ||| || ||||| |||||||| Sbjct 147032 TACATCCTTGATGCTGCTGAGGAGAATGGCGTGGAGTTGCCATACTCGTGCCGTGCTGGG 147091 Query 171060 GCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATCT 171119 || ||||| ||||| ||||| ||||||||| ||| || ||||| |||||| ||| Sbjct 147092 GCCTGTTCCACCTGCGCTGGCAAAATTGAGGTTGGCGAGGTAGATCAGTCCGATGGATCC 147151 Query 171120 TTCCTTGATGA 171130 ||||||||||| Sbjct 147152 TTCCTTGATGA 147162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622065540075000