Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq15 628 3e-175 seq72 192 7e-44 seq28 91.5 2e-13 >seq15 Length=3529114 Score = 628 bits (696), Expect = 3e-175 Identities = 748/1008 (74%), Gaps = 6/1008 (1%) Strand=Plus/Minus Query 165165 GACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 165224 ||||||||| | ||| ||||||||||||||||| || ||||| || || | || ||| Sbjct 3061853 GACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGCCTATTGCTCTTT 3061794 Query 165225 CCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGG 165284 || ||||||| | ||| | ||||||||| |||| ||||||||||| || || |||| Sbjct 3061793 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTTGG 3061734 Query 165285 TATACTCACGGACTTGCGAGTTCCTATCTTGAGGGT-GCAAACTTTCTTA-CTGCGGCAG 165342 ||||| || ||| | || ||||||||| | || ||| |||| ||||||| | ||||||| Sbjct 3061733 TATACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACGGCGGCAG 3061676 Query 165343 TTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTC 165402 |||| || || || | | | | || ||| | |||| |||||||| || || | | Sbjct 3061675 TTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACCGGAAGCAC 3061616 Query 165403 AAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACG 165462 ||||||| || | || ||||||||| | ||||| || ||||||||||| || ||||| | Sbjct 3061615 AAGGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTCGCTCTCCATG 3061556 Query 165463 GAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGC-ACGACTTATCGGT 165521 | || |||||||| |||||||||||| | || || |||||||| || | | || || | Sbjct 3061555 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGGTCTGTTCAAT 3061496 Query 165522 ATTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTT 165581 | || ||||| ||||| ||| | ||||||||||| || ||||| || ||| || || Sbjct 3061495 -TGCGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCTGTTTTTGTTTCCGTATTC 3061437 Query 165582 CTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCA 165641 ||||| ||||| ||||||||||| |||||||| |||||| || || || ||||| Sbjct 3061436 CTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGCAGCT 3061377 Query 165642 ATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCAC 165701 || || |||||| | || ||| ||||||| || ||||| |||||| |||| |||||||| Sbjct 3061376 ATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCCTTTCAT 3061317 Query 165702 ATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACA 165761 |||||||| || || || | ||||| | ||| | || | || |||||||| | ||| Sbjct 3061316 ATGATGGGAGTTGCCGGAGTATTAGGTGCAGCTCTCCTATGCGCTATTCATGGGGCTACT 3061257 Query 165762 GTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGT 165821 ||||| || ||| | | ||||||||||| ||||| || ||| ||| ||| | Sbjct 3061256 GTAGAAAACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCGAGCTTTTAACCCC 3061197 Query 165822 ACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTT 165881 ||||| | || ||||||||||| |||||||| |||||||| || ||||| || || ||| Sbjct 3061196 ACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTT 3061137 Query 165882 GGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATG 165941 ||| ||||||| |||||| |||||| | || ||||||||||| ||||| || |||| Sbjct 3061136 GGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACC 3061077 Query 165942 GGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGAT 166001 || | |||| ||| ||||||| | |||| || || || || || ||||| ||||| Sbjct 3061076 GGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGAC 3061017 Query 166002 TTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAA 166061 || || || ||||| || | || || || ||||| || ||||| || ||||| || ||| Sbjct 3061016 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAA 3060957 Query 166062 AACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAG 166121 || || || | || || || | ||||| ||| |||| || || || |||||||| Sbjct 3060956 AATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAA 3060897 Query 166122 AACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 || || | |||||||| || || | ||| | || ||||| |||||| Sbjct 3060896 AATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 3060849 >seq72 Length=1231634 Score = 192 bits (212), Expect = 7e-44 Identities = 213/279 (76%), Gaps = 4/279 (1%) Strand=Plus/Plus Query 165403 AAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACG 165462 ||||||| || | || ||||||||| | ||||| || ||||||||||| || ||||| | Sbjct 291129 AAGGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTCGCTCTCCATG 291188 Query 165463 GAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGC-ACGACTTATCGGT 165521 | || |||||||| |||||||||||| | || || |||||||| || | | || || | Sbjct 291189 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGGTCTGTTCAAT 291248 Query 165522 ATTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTT 165581 | || ||||| ||||| ||| | |||| |||||| || ||||| || ||| || || Sbjct 291249 -TGCGGCCTTATAATGCAATTTCATTCTTTGGTCCAATCGCTGTTTTTGTTTCCGTATTC 291307 Query 165582 CTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTC-GGGGTCGCAGC 165640 ||||| ||||| ||||||||||| |||||||| |||||| |||| || || ||||| Sbjct 291308 CTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCG-AGTTCTGGCGTAGCAGC 291366 Query 165641 AATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAA 165679 || || ||||| | || ||| ||||||| || ||||| Sbjct 291367 TATATTTTGATTCATCCTTTTCTTCCAAGGATTTCATAA 291405 >seq28 Length=2533697 Score = 91.5 bits (100), Expect = 2e-13 Identities = 185/273 (68%), Gaps = 24/273 (9%) Strand=Plus/Plus Query 165333 ACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGT 165392 || ||||||||||| | || || || | | | || ||| | ||| |||||||| Sbjct 2401559 ACAGCGGCAGTTTCCATCCCTGCTGATAGTTTAGCACACTCTTTGTTGCCACTATGGGGA 2401618 Query 165393 CCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTG 165452 || || | |||||||| || | || ||||| ||| | ||||| ||||| Sbjct 2401619 CCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGGGG----------TTTGTC 2401668 Query 165453 GCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCAC-G 165511 || |||| || || |||||||| |||||||||||| | || || |||||||| || | | Sbjct 2401669 GCTTTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCAG 2401728 Query 165512 ACTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGT 165571 || || | | || ||||| ||||| ||| | |||| ||||| ||| ||| Sbjct 2401729 TCTGTTCAAT-TGCGGCCTTATAATGCAATTTCATTCT------CTATTTTTGT-TTCCA 2401780 Query 165572 TAGTGTTTTTCTTATGTATCCTCTGGGACAATC 165604 || || ||| | ||||| ||||||||||| Sbjct 2401781 TA-----TTCCTTTTTTATCCACTGGGACAATC 2401808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557650043325000