Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq15 513 2e-140 seq72 140 4e-28 seq113 87.8 2e-12 >seq15 Length=3529114 Score = 513 bits (568), Expect = 2e-140 Identities = 726/1015 (72%), Gaps = 4/1015 (0%) Strand=Plus/Minus Query 178839 TTTGATGTACTCGATGACTGGCTTAAGC-GTGATCGGTTCGTTTTTGTTGGTTGGTCAGG 178897 |||||| | | || |||||| ||| | | || || ||||||||||| || ||||| || Sbjct 3061865 TTTGATATTATGGACGACTGG-TTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGG 3061807 Query 178898 TCTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATT 178957 || | || || ||| |||||| | || | || |||||| | || || || || || Sbjct 3061806 CCTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTT 3061747 Query 178958 CGTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCT 179017 || || || |||||||| || || | ||| ||| ||| | || || || |||||| | Sbjct 3061746 TGTAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGCAATTTCTT 3061687 Query 179018 TACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGG 179077 || || || || || || |||||| | | | | ||| || | | || |||||||| Sbjct 3061686 AACGGCGGCAGTTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGG 3061627 Query 179078 TCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGT 179137 || ||||| || || ||||| || ||| |||| | ||||| || ||| ||||||| Sbjct 3061626 ACCGGAAGCACAAGGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGT 3061567 Query 179138 GGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGC-AC 179196 || ||||| || || || || || |||||||||||| | || || |||||| | || | Sbjct 3061566 CGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTAG 3061507 Query 179197 GTCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTG 179256 |||| || | | || ||||| |||||||| | || ||||||||||| ||||| |||| Sbjct 3061506 GTCTGTTCAAT-TGCGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCTGTTTTTG 3061448 Query 179257 TGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTG 179316 | || || || || || ||||| || ||||| || ||||||||||| ||| |||| Sbjct 3061447 TTTCCGTATTCCTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTTTG 3061388 Query 179317 GAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCA 179376 | || ||||| || || || ||| | || ||| | || || || || || |||||| | | Sbjct 3061387 GCGTAGCAGCTATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGA 3061328 Query 179377 ACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTC 179436 |||| || || |||||||| || || || | | || | ||| | || || || |||| Sbjct 3061327 ACCCCTTTCATATGATGGGAGTTGCCGGAGTATTAGGTGCAGCTCTCCTATGCGCTATTC 3061268 Query 179437 ATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGG 179496 |||| ||||| ||||| ||||| || || ||||| |||| ||||||| ||| | Sbjct 3061267 ATGGGGCTACTGTAGAAAACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCGAG 3061208 Query 179497 CATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGT 179556 | || | || || |||| || || || ||||| ||||| || || ||||| || |||| Sbjct 3061207 CTTTTAACCCCACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGT 3061148 Query 179557 CTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTG 179616 | || ||||||||| | || || |||||| |||||| |||||||||||||| | |||| Sbjct 3061147 CCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTG 3061088 Query 179617 TTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAACCTTA 179676 | || |||| ||| | |||| | ||||| | |||| || || || ||||| Sbjct 3061087 TACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTAC 3061028 Query 179677 GAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGT 179736 | || |||||||| ||||| || || ||| | || || || |||||||| || ||||| | Sbjct 3061027 GTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTT 3060968 Query 179737 TCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGATC 179796 |||| ||||| || || || || || || ||| | ||||| ||||||||| | |||| Sbjct 3060967 TCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATC 3060908 Query 179797 AACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 | || |||||||| || |||| ||||| || || | ||| | || |||||||| Sbjct 3060907 AGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 3060853 >seq72 Length=1231634 Score = 140 bits (154), Expect = 4e-28 Identities = 191/264 (72%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 179103 CGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTC 179162 || ||| |||| | ||||| || ||| ||||||| || ||||| || || || || || Sbjct 291143 CGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTGCACTA 291202 Query 179163 ATAGGTTTCATGCTTCGGCAGTTTGAAATCGC-ACGTCTAGTCGGTATTCGTCCTTACAA 179221 |||||||||||| | || || |||||| | || | |||| || | | || ||||| || Sbjct 291203 ATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGGTCTGTTCAAT-TGCGGCCTTATAA 291261 Query 179222 TGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTCTCATGTATCCTCT 179281 |||||| | || | ||||||||| ||||| ||||| || || || || || ||||| || Sbjct 291262 TGCAATTTCATTCTTTGGTCCAATCGCTGTTTTTGTTTCCGTATTCCTTATTTATCCACT 291321 Query 179282 CGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGATTTTCCGCTTCCT 179341 ||||| || ||||||||||| ||| | ||| || ||||| || || | ||| | Sbjct 291322 GGGACAATCTGGTTGGTTCTTTGCACCGAGTTCTGGCGTAGCAGCTATATTTTGATTCAT 291381 Query 179342 ACTCTTCCTACAGGGCTTCCACAA 179365 || ||| | || || || || || Sbjct 291382 CCTTTTCTTCCAAGGATTTCATAA 291405 >seq113 Length=353742 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 176172 TATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCAACTACTCGTGCCGCGCTGGT 176231 || || || |||||||||||||| || || || | ||||||||||| ||||| Sbjct 147032 TACATCCTTGATGCTGCTGAGGAGAATGGCGTGGAGTTGCCATACTCGTGCCGTGCTGGG 147091 Query 176232 GCCTGTTCGAGTTGTGCAGG-AAAACTCATCTCGGGCACGGTAGATCAAAGCGATCAATC 176290 |||||||| | || || || |||| | | | ||| ||||||||| |||| ||| Sbjct 147092 GCCTGTTCCACCTGCGCTGGCAAAATTGAGGT-TGGCGAGGTAGATCAGTCCGATGGATC 147150 Query 176291 GTTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGACTTGTGTTTCATATCCTAC 176350 ||||||||||| | ||| | || ||| | | ||||| ||||| || || |||| Sbjct 147151 CTTCCTTGATGACGGGCAGCAGGCTGAAGGCTATGTGCTGACATGTGTGTCGTACCCTAA 147210 Query 176351 GAGCGATTGTGTGATTGAGACTGAGAAAGAAG 176382 | ||| ||||| || | ||| | ||||||| Sbjct 147211 GTCCGACTGTGTCATCCACACTCACAAAGAAG 147242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596302541350000