Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq15 536 1e-147 seq72 134 2e-26 >seq15 Length=3529114 Score = 536 bits (594), Expect = 1e-147 Identities = 726/1009 (72%), Gaps = 2/1009 (0%) Strand=Plus/Minus Query 170605 TGGATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGGTCTGGACTTCTTCTTT 170664 |||| |||||| | | | || || || || ||||| || ||||| || || | || | Sbjct 3061855 TGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGCCTATTGCTCT 3061796 Query 170665 TTCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACATTTGTTACAAGTT 170724 |||| ||||||| | || | || || ||| |||| || || || ||||| || || Sbjct 3061795 TTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTT 3061736 Query 170725 GGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCTAATTTCCTTACAGCGGCTG 170784 |||| ||||| ||| | || ||||| || | |||||| |||||| | || ||||| | Sbjct 3061735 GGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGCAATTTCTTAACGGCGGCAG 3061676 Query 170785 TGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 170844 | || || |||||| || | | | || ||| | | ||||| ||||| || || | | Sbjct 3061675 TTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACCGGAAGCAC 3061616 Query 170845 AGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 170904 | |||||||| || |||| ||| | ||||| || |||| |||||| || ||||| | Sbjct 3061615 AAGGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTCGCTCTCCATG 3061556 Query 170905 GAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCG-TCTCGTAGGG 170963 | || ||||| || |||||||||||| | || || |||||| | | | ||| || Sbjct 3061555 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGGTCT-GTTCAA 3061497 Query 170964 ATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTC 171023 | | || || |||||||| | ||||||||||| |||||||| ||||| ||| ||| Sbjct 3061496 TTGCGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCTGTTTTTGTTTCCGTATTC 3061437 Query 171024 CTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCA 171083 || || ||||| || || || || |||||||||| ||||| ||||| || ||||| Sbjct 3061436 CTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGCAGCT 3061377 Query 171084 ATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCAT 171143 || || || ||| | || ||| | ||||| || || || ||||| |||| || |||||| Sbjct 3061376 ATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCCTTTCAT 3061317 Query 171144 ATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACA 171203 |||||||| ||||| || | | || | || | || | || |||||||| | ||| Sbjct 3061316 ATGATGGGAGTTGCCGGAGTATTAGGTGCAGCTCTCCTATGCGCTATTCATGGGGCTACT 3061257 Query 171204 GTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACACG 171263 ||||| || ||| | | |||||||||||| ||||| ||||| || ||| || | Sbjct 3061256 GTAGAAAACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCGAGCTTTTAACCCC 3061197 Query 171264 ACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTT 171323 ||||| | |||||| || ||||| |||||||| ||||| || || ||||| || || ||| Sbjct 3061196 ACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTT 3061137 Query 171324 GGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATG 171383 ||| | || || |||||| |||||||| |||||||||||||| ||||| || |||| Sbjct 3061136 GGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACC 3061077 Query 171384 GGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTAGGGCTTATGAT 171443 ||| | ||| | ||| | | || | |||| || ||||| || || | || ||||| Sbjct 3061076 GGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGAC 3061017 Query 171444 TTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAAG 171503 ||||| ||||| || | ||||| |||||||| || || ||||| ||||| ||||| Sbjct 3061016 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAA 3060957 Query 171504 AACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTAGACCAACCACATGAA 171563 || || || || || || ||| ||||||| ||||||||| | || || || |||||| Sbjct 3060956 AATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAA 3060897 Query 171564 AACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACTTTGAT 171612 || || | ||||| ||||| |||||||| ||||| || || |||| || Sbjct 3060896 AATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 3060848 >seq72 Length=1231634 Score = 134 bits (148), Expect = 2e-26 Identities = 197/276 (71%), Gaps = 2/276 (1%) Strand=Plus/Plus Query 170847 GGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGA 170906 |||||||| || |||| ||| | ||||| || |||| |||||| || ||||| || Sbjct 291131 GGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTCGCTCTCCATGGG 291190 Query 170907 GCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGT-CGTCTCGTAGGGAT 170965 || ||||| || |||||||||||| | || || |||||| | | |||| || | Sbjct 291191 GCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGGTCT-GTTCAATT 291249 Query 170966 TAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTCCT 171025 | || || |||||||| | |||| |||||| |||||||| ||||| ||| ||||| Sbjct 291250 GCGGCCTTATAATGCAATTTCATTCTTTGGTCCAATCGCTGTTTTTGTTTCCGTATTCCT 291309 Query 171026 CATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAAT 171085 || ||||| || || || || |||||||||| ||||| | ||| || ||||| || Sbjct 291310 TATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTCTGGCGTAGCAGCTAT 291369 Query 171086 CTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAA 171121 || | ||| | || ||| | ||||| || || || Sbjct 291370 ATTTTGATTCATCCTTTTCTTCCAAGGATTTCATAA 291405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592193773450000