Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq6 161 2e-34 seq1 107 4e-18 seq5 105 1e-17 seq12 104 5e-17 seq10 104 5e-17 seq9 104 5e-17 seq8 104 5e-17 seq3 104 5e-17 seq11 98.7 2e-15 >seq6 Length=25711811 Score = 161 bits (178), Expect = 2e-34 Identities = 312/455 (69%), Gaps = 8/455 (2%) Strand=Plus/Minus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 || |||||||| |||||||||| | || || || || || | || || || ||| Sbjct 7420946 TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTTC 7420887 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 7420886 TGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 7420827 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTC 230352 ||||| ||||||||||| || || | |||| | || | || ||| Sbjct 7420826 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCTACGACCTCCTC 7420767 Query 230353 CAGAACAAGCTACCATTCGAGACG---GTCAAACAAATCATTACAGAAGCAGTTGAAAAC 230409 | |||||| | | |||| || ||| | ||| | | || || || || | | Sbjct 7420766 CGCGGCAAGCT-CGA--CGAGGCGCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATC 7420710 Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACT 230468 || | ||||||| | || ||||| | || ||||| || | |||||||||| || || Sbjct 7420709 GAGAGGGAGTTCGTCTGCGACGCGCTCCCC-GTCGCGCTCGTCGGCATGAACGGCGACCT 7420651 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 ||| | ||||||||||||||||| ||||||||| | | | ||||| || | | |||| Sbjct 7420650 CATGAGCCAGTACATCGAATTCGTCGCCGACCGCCTCCTCATGGCACTCGGCTGCAAGAA 7420591 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 |||||||| |||||||| | | ||||||||||| || || || || ||||| Sbjct 7420590 GATGTACAACGTCGCCAACCCCTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGAC 7420531 Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 |||||||||||| ||||| ||| | ||||| |||| Sbjct 7420530 CAACTTCTTCGAGAAGCGCGTCGGCGACTACCAGA 7420496 Score = 134 bits (148), Expect = 3e-26 Identities = 273/398 (69%), Gaps = 8/398 (2%) Strand=Plus/Plus Query 230230 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 230289 |||||||||||||| ||||| ||| || | ||||| |||||| | || ||| Sbjct 1225222 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTCACCTTCTCCAAC 1225281 Query 230290 GAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAG 230349 ||| ||||| ||||||||||||||||| | |||| | || | || Sbjct 1225282 GAGCTCATCTCCCGCGACGAGGGTCTCCACTGCGACTTCGCCTGCCTCCTCTACGACCTC 1225341 Query 230350 CTCCAGAACAAGCTACCATTCGAG--ACG-GTCAAACAAATCATTACAGAAGCAGTTGAA 230406 |||| |||||| | | |||| ||| ||| | | ||| | | || || || || Sbjct 1225342 CTCCGCGGCAAGCT-CGA--CGAGTCACGCGTCCAGGAGATCGTCGCCGACGCCGTGGAC 1225398 Query 230407 AACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGA 230465 | ||| | ||||||| | || ||||| | || ||||| || | || ||||||| || Sbjct 1225399 ATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCC-GTCGCGCTCGTCGGGATGAACGGCGA 1225457 Query 230466 ACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGA 230525 || ||| | ||||||||||| ||||| |||||||| | | | || || || | | | Sbjct 1225458 GCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGGCTGCTCATGGCGCTCGGGTGCAA 1225517 Query 230526 GAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAA 230585 ||| |||||||| ||||| || | | ||||||||||| || || || || || Sbjct 1225518 GAAGATGTACAACGTCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAA 1225577 Query 230586 GACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 ||||||||||||||| ||||| ||| | ||||| |||| Sbjct 1225578 GACCAACTTCTTCGAGAAGCGCGTCGGCGACTACCAGA 1225615 >seq1 Length=36915442 Score = 107 bits (118), Expect = 4e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||||||||||||||||||||||||| || || |||| || |||||||||||||||| Sbjct 36824861 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 36824920 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 36824921 GCCCCACGGTGGGC 36824934 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 25202725 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 25202784 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 25202785 CCCACGGTGGGC 25202796 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 26012940 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 26012999 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 26013000 CCCACGGTGGGC 26013011 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 30492244 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 30492303 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 30492304 CCCACGGTGGGC 30492315 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/73 (86%), Gaps = 3/73 (4%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||| ||||||| ||||||| || || |||| | |||||||||||||||| Sbjct 35797107 TGCCCGTCTAGCCCAGTCGGCAGAGCGCAAGGCTCTTAACC---TGGTCGTGGGTTCGAG 35797051 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 35797050 CCCCACGGTGGGC 35797038 >seq5 Length=24206129 Score = 105 bits (116), Expect = 1e-17 Identities = 73/83 (88%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 165699 TTAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCG 165758 |||| | || ||||||||||||||||||||||||||| || || |||| || ||||||| Sbjct 12375052 TTAATATGCAAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCG 12374993 Query 165759 TGGGTTCGAGCCCCACGATGGGC 165781 ||||||||||||||||| ||||| Sbjct 12374992 TGGGTTCGAGCCCCACGGTGGGC 12374970 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 20747148 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 20747089 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 20747088 CCCACGGTGGGC 20747077 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 21181458 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 21181399 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 21181398 CCCACGGTGGGC 21181387 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||||||||||||||||||||| ||| || || |||| || |||||||||||||||| Sbjct 17882252 TTGCCCGTCTAGCTCAGTCGGTAGAACGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 17882193 Query 165768 GCCCCACGATGGG 165780 |||||||| |||| Sbjct 17882192 GCCCCACGGTGGG 17882180 >seq12 Length=20550741 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 17084456 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 17084515 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 17084516 CCCACGGTGGGC 17084527 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 17335077 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 17335018 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 17335017 CCCACGGTGGGC 17335006 >seq10 Length=19274048 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 13541294 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 13541235 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 13541234 CCCACGGTGGGC 13541223 Score = 87.8 bits (96), Expect = 4e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 165719 GCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACGATG 165778 |||||||||||||||||| || || |||| || |||||||||||||||||||||||| || Sbjct 17421447 GCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACGGTG 17421388 Query 165779 GGC 165781 ||| Sbjct 17421387 GGC 17421385 >seq9 Length=19219615 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 9784434 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9784493 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 9784494 CCCACGGTGGGC 9784505 >seq8 Length=22678724 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 14826162 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 14826221 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 14826222 CCCACGGTGGGC 14826233 Score = 104 bits (114), Expect = 5e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || ||||||||||||||||||||||||||| || || |||| || ||||||||||||||| Sbjct 14830373 CTGGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 14830432 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 14830433 AGCCCCACGGTGGGC 14830447 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 15073666 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 15073725 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 15073726 CCCACGGTGGGC 15073737 >seq3 Length=33311619 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 15758224 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 15758283 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 15758284 CCCACGGTGGGC 15758295 >seq11 Length=23014695 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || ||||||||||| |||||| Sbjct 22851736 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGGTCGAGC 22851795 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 22851796 CCCACGGTGGGC 22851807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823837359560