Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq5 132 4e-26 seq6 120 3e-22 seq2 113 4e-20 seq4 109 5e-19 seq1 96.9 3e-15 seq9 89.7 4e-13 seq3 84.2 2e-11 >seq5 Length=24206129 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||| ||| ||||| ||||||||||| || ||||| || | || Sbjct 7376440 CCACCACGGAGACGGAGCGCCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAACCTGCT 7376499 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| || | ||||| ||||| ||||| ||| | || |||| |||||| ||| ||| Sbjct 7376500 AAGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGTCGCTGCTGATCCGGGGGA 7376559 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| |||||| | | | | || || | ||| Sbjct 7376560 ATGCCCTCCTTGTCCTGAATCTTTGCTTTCACGTTGTCAATTGTGTCCGACGACTCAACC 7376619 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| ||||||||| |||||||| || || |||||||| ||||||||| Sbjct 7376620 TCCAAGGTAATGGTTTTGCCGGTCAATGTCTTGACAAAGATTTGCATT 7376667 Score = 120 bits (132), Expect = 3e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 |||||||| || | || |||||||| |||||||| ||||| || ||||| || | || Sbjct 19881277 GAGCACCAAGTGTAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGGCCATC 19881218 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 ||||||||| || || || | || ||||||||||||||| ||| | ||| ||||| || Sbjct 19881217 CTCCAGCTGCTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGGGGGATGCCCTCCTTATC 19881158 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| ||||| | | ||| || || | ||| |||| |||||| || Sbjct 19881157 CTGGATCTTCGCCTTCACGTTGTCGATGGTGTCTGAGCTCTCAACCTCCAGGGTAATAGT 19881098 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||||| || | || ||||| || || |||||| Sbjct 19881097 CTTGCCAGTGAGAGTCTTGACGAAAATCTGCATT 19881064 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || | ||| ||||||| | || | || |||||||| || || || ||||| | Sbjct 7376666 TTCCACCCCTGAGCTTGAGCACTAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCAG 7376725 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||||||| | |||||| |||| ||||| || | || || | |||||||||| ||| Sbjct 7376726 CCAGGGTGCGTCCGTCCTTGAGCTACTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGCGG 7376785 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||| |||||||| ||||| ||||| | | ||| |||||| | ||| Sbjct 7376786 GGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATTGTATCAGAAGACTCGA 7376845 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||||||||| ||||||| || |||||||| || ||||| Sbjct 7376846 CCTCAAGCGTAATGGTCTTTCCGGTTAGGGTCTTGACAAAAATCTGCAT 7376894 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| || ||||| | | ||||||||||| ||||| Sbjct 19881033 GTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTCCTGCCATCCTCCAGCTGCTTGCCG 19880974 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| ||||||| | ||||||||| ||| | ||| |||||||| |||||| ||| Sbjct 19880973 GCAAAAATAAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTC 19880914 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| || || | ||| || | |||||||||||||| || | || Sbjct 19880913 ACGTTGTCGATCGTGTCTGATGACTCAACCTCAAGCGTAATGGTCTTGCCAGTAAGGGTC 19880854 Query 21159 TTGACAAATATTTGCATT 21176 || ||||| || |||||| Sbjct 19880853 TTCACAAAGATCTGCATT 19880836 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 |||||||| || | || |||||||| |||||||| ||||| || ||||| || | || Sbjct 19881505 GAGCACCAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTACGGCCATC 19881446 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||| ||||| || | || || | ||||||||| ||| | ||||||||||| Sbjct 19881445 TTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTC 19881386 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| ||||| | | ||| ||||| | ||| |||| |||||||| Sbjct 19881385 CTGGATCTTAGCCTTCACATTGTCGATGGTATCGGAGCTCTCAACCTCCAGAGTAATGGT 19881326 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||| || | || ||||| || || ||||| Sbjct 19881325 CTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 19881293 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| || ||||| | ||||| ||||| ||||| Sbjct 19880805 GTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTACCATCCTCGAGCTGCTTGCCA 19880746 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || | |||||||||| ||| | || |||||||| ||||||| || Sbjct 19880745 GCAAAGATCAGACGCTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTGGATCTTTGCCTTA 19880686 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | ||||||| | ||| || | ||| || |||||||| || || || Sbjct 19880685 ACGTTGTCAATAGTATCAGAAGACTCAACCTCAAGGGTGATAGTCTTGCCAGTCAAGGTC 19880626 Query 21159 TTGACAAATATTTGCAT 21175 |||||||| |||||||| Sbjct 19880625 TTGACAAAGATTTGCAT 19880609 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||| | || | ||||||||||| || ||||| ||||| || Sbjct 3088042 CCGCCGCGGAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 3087983 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||| ||||| ||||| || | || || | |||||||||| ||| Sbjct 3087982 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGG 3087923 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| ||||| | | ||| || || || |||| Sbjct 3087922 ATCCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACC 3087863 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 |||| || |||||||| || || | || || || || || ||||| ||| Sbjct 3087862 TCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 3087812 >seq6 Length=25711811 Score = 120 bits (132), Expect = 3e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 20958 AGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGG 21017 |||||||| |||| || | ||||||||||| || ||||| ||||| |||| ||| || Sbjct 23416758 AGCCTGAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGG 23416699 Query 21018 GCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCC 21077 | ||||||||||| ||||| || | || || | |||||||||| ||| | || ||| Sbjct 23416698 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATNCCCTCC 23416639 Query 21078 TTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTA 21137 ||||| |||||| ||||| | | ||| || || || ||| || | || Sbjct 23416638 TTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCCGAGGACTCGACCTCAAGCGTG 23416579 Query 21138 ATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||||||||| | || ||||| || || ||||| Sbjct 23416578 ATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 23416541 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| ||||| ||||||||||| |||||||| || || ||| Sbjct 22963774 CCACCACGGAGGCGGAGCACCAGGTGCAAGGTGGACTCCTTCTGAATGTTGTAATCAGCC 22963833 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||| ||||| ||||| ||| | || || | |||||||||| ||| Sbjct 22963834 AGTGTACGTCCATCCTCGAGCTGCTTGCCTGCAAAGATGAGGCGCTGCTGGTCCGGGGGA 22963893 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||| ||||| | | ||| | || || ||| Sbjct 22963894 ATTCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATCTTGTCCGAGGACTCGACC 22963953 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || |||||||| || || || || || ||||| || ||||| Sbjct 22963954 TCAAGAGTGATGGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCAT 22964000 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| |||||||| || | ||||| ||||| ||||| Sbjct 23416349 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 23416290 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || || | |||||||||| ||| | ||| |||||||| |||||| || Sbjct 23416289 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 23416230 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | || || || ||| || | ||| |||||||||||||| | || Sbjct 23416229 ACATTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 23416170 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| || ||||| Sbjct 23416169 TTCACAAAGATCTGCAT 23416153 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| || | || |||||||| || ||||| || ||||| Sbjct 23416995 CCACCACGGAGGCGGAGCACCAGGTGGAGTGTTGACTCCTTCTGGATGTTGTAATCCGCA 23416936 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||| ||||| || || ||| | || || | |||||||||| ||| Sbjct 23416935 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGGGGG 23416876 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||||| | | | | ||| || | ||| Sbjct 23416875 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCGGACGACTCAACC 23416816 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||||||||||||| || | || || || || || ||||| Sbjct 23416815 TCAAGGGTAATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 23416769 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| || ||||| ||||| || | ||||| || || ||||| Sbjct 22964032 GTGGACTCCTTCTGGATGTTGTAATCCGCGAGGGTGCGGCCATCCTCTAGTTGCTTGCCA 22964091 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || | |||||||| || | ||| |||||||| ||||| ||| Sbjct 22964092 GCAAAGATGAGACGTTGCTGGTCAGGTGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTC 22964151 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | |||||| || ||| || | ||| ||||||||||| || | || Sbjct 22964152 ACATTGTCAATTGTATCAGAGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGTGTC 22964211 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| || ||||| Sbjct 22964212 TTCACAAAGATCTGCAT 22964228 >seq2 Length=31686972 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| || ||||| | | ||||||||||| ||||| Sbjct 3056820 GTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCCAGCTGCTTGCCA 3056879 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || || | |||||||||| ||| | ||| |||||||| |||||| || Sbjct 3056880 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 3056939 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| || ||| | |||| || | ||| || ||||||||||| | || Sbjct 3056940 ACGTTGTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCGGTCAGAGTC 3056999 Query 21159 TTGACAAATATTTGCAT 21175 |||||||| || ||||| Sbjct 3057000 TTGACAAAGATCTGCAT 3057016 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | || |||||||| || ||||| ||||| || ||||| || | ||| Sbjct 3056250 AGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCATCC 3056309 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| ||||| || | || || | ||||||||| ||| | ||| |||||||| Sbjct 3056310 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 3056369 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | ||| || || | ||| |||| ||| |||||| Sbjct 3056370 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGCTCTCAACCTCCAGGGTGATGGTC 3056429 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || |||||||| || ||||| Sbjct 3056430 TTGCCTGTGAGGGTCTTGACAAAGATCTGCAT 3056461 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| || | ||||||||||| || ||||| ||||| || Sbjct 3056007 CCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 3056066 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | ||||||||||| ||||| || | || || | ||||||||| ||| Sbjct 3056067 AGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGGGGA 3056126 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| ||||| | | | || ||| | ||| Sbjct 3056127 ATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTATCAATGGTGTCAGAGCTCTCAACC 3056186 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||| || || || || || || || || ||||| Sbjct 3056187 TCCAAAGTGATGGTCTTCCCAGTCAAGGTCTTCACGAAGATCTGCAT 3056233 >seq4 Length=27574323 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| ||||| |||||||| ||||| ||||| || ||||| || | ||||| ||||| Sbjct 24792622 TGCAGGGTGGATTCCTTTTGGATGTTGTAGTCTGCAAGGGTGCGGCCATCCTCGAGCTGC 24792563 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 || || ||| | || || | ||||||||| || | || |||||||| |||||| Sbjct 24792562 TTCCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATCTTG 24792503 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 ||||| | ||| || || || ||| |||| |||||||||||||||||| Sbjct 24792502 GCCTTCACATTATCGATCGTGTCGGAGGACTCGACCTCCAGGGTAATGGTCTTGCCGGTG 24792443 Query 21153 AACGTTTTGACAAATATTTGCAT 21175 | || || || ||||||||||| Sbjct 24792442 AGGGTCTTCACGAATATTTGCAT 24792420 Score = 105 bits (116), Expect = 6e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||||| ||||||||||| || |||||||| ||||| Sbjct 24792418 CCTCCACGAAGGCGGAGGACAAGGTGCAAGGTGGACTCCTTCTGGATGTTATAATCCGCG 24792359 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||| ||||| ||||| || | ||||| | |||||||| || Sbjct 24792358 AGAGTACGCCCATCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGTTGCTGGTCTGGAGGG 24792299 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||||| ||||| | | | | ||||| || ||| Sbjct 24792298 ATGCCCTCCTTGTCCTGAATCTTAGCCTTCACATTGTCAATCGTATCGGAGGACTCAACC 24792239 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAA 21181 |||| ||| ||||||||||| || | || || || ||||| ||||| | ||| Sbjct 24792238 TCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAATATCTGCATCTGGAA 24792186 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| ||||||||||| || ||||||||||| || ||||| || | ||||| ||||| Sbjct 24793078 TGCAGGGTGGACTCCTTCTGGATGTTATAGTCGGCAAGGGTGCGGCCATCCTCGAGCTGC 24793019 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 ||||| || | || || | ||||||||| || | ||| ||||| || |||||| Sbjct 24793018 TTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTG 24792959 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 ||||| | | ||| || ||| || ||| |||| || ||||||||||| || Sbjct 24792958 GCCTTCACGTTGTCGATGGTGTCAGAGGACTCAACCTCCAGAGTGATGGTCTTGCCAGTG 24792899 Query 21153 AACGTTTTGACAAATATTTGCAT 21175 | || || || || || ||||| Sbjct 24792898 AGGGTCTTCACGAAGATCTGCAT 24792876 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| ||||||||||| || ||||| || || || ||||| | | ||||| ||||| Sbjct 24792850 TGCAGGGTGGACTCCTTCTGGATGTTGTAATCTGCAAGGGTGCGACCATCCTCAAGCTGC 24792791 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 ||||| || | || || | ||||||||| || | || |||||||| |||||| Sbjct 24792790 TTGCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGGATCTTG 24792731 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 ||||| | | ||| || ||| || ||| |||| ||| || |||||||| || Sbjct 24792730 GCCTTCACATTGTCGATCGTGTCAGAGGACTCAACCTCCAAGGTGATCGTCTTGCCAGTA 24792671 Query 21153 AACGTTTTGACAAATATTTGCAT 21175 | || || ||||| || ||||| Sbjct 24792670 AGGGTCTTCACAAAGATCTGCAT 24792648 >seq1 Length=36915442 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| || | || |||||||| || ||||| ||||| || Sbjct 10946924 CCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCG 10946983 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | ||||||||||||| ||||| || | || || | ||||||||| || Sbjct 10946984 AGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGG 10947043 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| ||||| | | ||| || || || |||| Sbjct 10947044 ATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACC 10947103 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 |||| || || ||||| || || | || || || || || ||||| ||| Sbjct 10947104 TCCAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 10947154 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| |||| || |||||||| || ||||| ||||| ||| Sbjct 21234750 CCGCCGCGGAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 21234691 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | ||||||||||||| ||||| || | || || | |||||||||| || Sbjct 21234690 AGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGG 21234631 Query 21069 ACGCCTTCCTTGTC 21082 | || |||||||| Sbjct 21234630 ATCCCCTCCTTGTC 21234617 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 20955 CGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTT 21014 || || | |||||| | |||| || |||||||| || ||||| ||||| ||||| || Sbjct 21238870 CGGAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTG 21238811 Query 21015 TGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCT 21074 | ||||||||||||| ||||| || | || || | |||||||| | || ||||| Sbjct 21238810 CGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTGCGGCGGGACGCCC 21238751 Query 21075 TCCTTGTCGGCGATC 21089 ||| ||||| |||| Sbjct 21238750 TCCCTGTCGTGGATC 21238736 >seq9 Length=19219615 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| |||| || |||||||| || ||||| ||||| ||| Sbjct 15021280 CCGCCGCGGAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 15021221 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCC 21062 ||||| || | ||||||||||| || ||||| | || || | |||||||||| Sbjct 15021220 AGGGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCC 15021167 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/120 (77%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| || | || |||||||| |||||||| ||||| ||| Sbjct 13562113 CCACCGCGGAGGCGGAGCACCAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCC 13562054 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCA-CGGG 21067 ||||| || | ||||| ||||| || ||||| | || || | ||||||||||| |||| Sbjct 13562053 AGGGTGCGGCCATCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCCAGCGGG 13561994 >seq3 Length=33311619 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||||||| || | || | ||||||||||| || ||||| ||||| ||| Sbjct 6652639 CCGCCACGGAGCCTGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 6652698 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCC 21062 ||||| | ||||||||||||| || || || | || || | |||||||||| Sbjct 6652699 AGGGTGCGTCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGGTCC 6652752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422259138244592