Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq11 96.9 3e-15 seq12 82.4 6e-11 >seq11 Length=23014695 Score = 96.9 bits (106), Expect = 3e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 20458 TCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCA 20517 ||||| || ||||||||||| || |||||||||||||| |||||||| ||||| |||||| Sbjct 13890013 TCGTGCCAGATGTATCAACGCTCTGCTGATATGGGACTTGGTGTTCCATTCAACATTGCA 13890072 Query 20518 AGTTATGCGCTGCTTACGTATATGATTGCACATGTT 20553 ||| | || || || || |||||||| |||||| Sbjct 13890073 TCATATTCTCTTCTGACATACATGATTGCTCATGTT 13890108 >seq12 Length=20550741 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20430 CCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATAT 20489 ||| ||||| |||| || || || || || || ||||| ||||| || |||||||| Sbjct 11290402 CCAGTTTTATGTTGAGGATGGGGAGTTATCATGCCAGATGTACCAACGCTCTGCTGATAT 11290461 Query 20490 GGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACA 20549 ||| || ||||| || ||||| |||||| ||| | || || || | |||||||||||| Sbjct 11290462 GGGGCTCGGTGTGCCATTCAACATTGCATCATATTCTCTTCTGACATGTATGATTGCACA 11290521 Query 20550 TGT 20552 || Sbjct 11290522 AGT 11290524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399183941619340