Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08]
12 sequences; 308,272,304 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq1 132 4e-26
seq9 111 1e-19
seq5 105 5e-18
seq2 102 6e-17
seq6 98.7 8e-16
>seq1
Length=36915442
Score = 132 bits (146), Expect = 4e-26
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| || || ||||||||| |||||||||||| || ||| |||| |||
Sbjct 10946942 ACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCC 10947001
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || |||||||| || | |||||| |||||||| || | ||||||||||||
Sbjct 10947002 AGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGG 10947061
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | ||||| ||||||||||| || ||||||||
Sbjct 10947062 ATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCTTC 10947121
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340
|||||||| |||||||| ||||| ||||| |||
Sbjct 10947122 CCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 10947154
Score = 129 bits (142), Expect = 5e-25
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||||||||| ||||||||| |||||||||||| ||| ||| |||| |||
Sbjct 21234732 ACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGCCCGTCCTCC 21234673
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || |||||||| || | |||||| ||||| || || | ||||||||||||
Sbjct 21234672 AGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGC 21234613
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
| || ||| || | | |||| | | ||||||||||| || || |||||
Sbjct 21234612 ACCTTCGCCTTGACGTTCTGGATCGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTTC 21234553
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||||||| |||||||| ||||| |||||
Sbjct 21234552 CCCGTCAGGGTCTTCACGAAGATCTGCAT 21234524
Score = 87.8 bits (96), Expect = 1e-12
Identities = 86/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||||||||| ||||||||| |||||||||||| ||| ||| |||| ||||| ||
Sbjct 21238853 GTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGCCCGTCCTCCAGCTG 21238794
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243
|| |||||||| || | |||||| |||| || || || |||||| ||||
Sbjct 21238793 CTTGCCGGCGAAGATGAGCCGCTGCTGGTGCGGCGGGACGCCCTCCCTGTC 21238743
>seq9
Length=19219615
Score = 111 bits (122), Expect = 1e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
|||||| || | || | |||||||| || || ||||||||||||||||||||||
Sbjct 11939322 GCCACCCCTGAGCCTGAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCGGC 11939263
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228
|||| ||| | || ||||| || || |||||||||||||| |||||||| || |||||
Sbjct 11939262 CAGTGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAATATCAAACGCTGTTGATCTGGAGG 11939203
Query 45229 CACACCCTCCTTGTCC 45244
| || |||||||||
Sbjct 11939202 GATCCCTTCCTTGTCC 11939187
>seq5
Length=24206129
Score = 105 bits (116), Expect = 5e-18
Identities = 148/208 (71%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||| ||||||||| |||||||||||| || ||| | || || || ||
Sbjct 3088019 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCGAGCTG 3087960
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| |||||||| || | ||||| ||||| || || | || ||||||||| || ||
Sbjct 3087959 CTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATCCCTTCCTTGTCCTGGATCTT 3087900
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | | ||||| ||||||||||| || || ||||| |||||
Sbjct 3087899 GGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCCGT 3087840
Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTG 45340
||| |||||||| ||||| ||||| |||
Sbjct 3087839 CAGGGTCTTCACGAAGATCTGCATCTTG 3087812
Score = 98.7 bits (108), Expect = 8e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || ||||||||||||||||||||| || ||| | || |||
Sbjct 19881273 ACCAAGTGTAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCC 19881214
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || ||||| || | | ||| ||||| || || | |||||||| |||
Sbjct 19881213 AGCTGCTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGG 19881154
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| | ||| ||||||| |||||| ||||||
Sbjct 19881153 ATCTTCGCCTTCACGTTGTCGATGGTGTCTGAGCTCTCAACCTCCAGGGTAATAGTCTTG 19881094
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || |||||||| || || || |||||
Sbjct 19881093 CCAGTGAGAGTCTTGACGAAAATCTGCAT 19881065
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/210 (71%), Gaps = 4/210 (2%)
Strand=Plus/Plus
Query 45129 CCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GTTCAGTTGGCGATCGTCGTCC 45187
||| ||||| ||| ||||||||| |||||||| | | | || || || | || ||
Sbjct 7376459 CCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAACCTGCTAAGGTG-CGGCCATCCTCG 7376517
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || || || |||| ||||| || || || || | |||||||||||| |
Sbjct 7376518 AGCTGCTTGCCAGCAAAGATCAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGA 7376577
Query 45248 ATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306
|| ||| |||| || | || ||||| ||| ||||||| |||||| || ||
Sbjct 7376578 ATCTTT-GCTTTCACGTTGTCAATTGTGTCCGACGACTCAACCTCCAAGGTAATGGTTTT 7376636
Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||| |||| ||||| ||||||||||||||
Sbjct 7376637 GCCGGTCAATGTCTTGACAAAGATTTGCAT 7376666
Score = 91.5 bits (100), Expect = 1e-13
Identities = 143/205 (70%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||| ||||||||| ||||||||||| || | | | || || || ||
Sbjct 19880812 GTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTACCATCCTCGAGCTG 19880753
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| || || || |||| ||||| ||||| || || | |||||||||||| || ||
Sbjct 19880752 CTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTGGATCTT 19880693
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
| |||||| | | | || | ||| ||||| | ||| || |||||||| ||
Sbjct 19880692 TGCCTTAACGTTGTCAATAGTATCAGAAGACTCAACCTCAAGGGTGATAGTCTTGCCAGT 19880633
Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337
|| ||||| |||||||||||||||
Sbjct 19880632 CAAGGTCTTGACAAAGATTTGCATG 19880608
>seq2
Length=31686972
Score = 102 bits (112), Expect = 6e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| || ||| ||||||||| |||||||||||| || ||| | || |||
Sbjct 3056025 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCATCCTCC 3056084
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || ||||| |||| ||||| ||||| || || | ||||||||||||
Sbjct 3056085 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGG 3056144
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| | ||| ||||||| || || |||||
Sbjct 3056145 ATCTTGGCCTTCACATTATCAATGGTGTCAGAGCTCTCAACCTCCAAAGTGATGGTCTTC 3056204
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| |||| |||||||| ||||| |||||
Sbjct 3056205 CCAGTCAAGGTCTTCACGAAGATCTGCAT 3056233
Score = 102 bits (112), Expect = 6e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| || || ||||||||| ||||||||||| || ||| | || ||
Sbjct 3056253 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCATCCTCG 3056312
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || |||||||| || | ||||| ||||| || || | ||||||||||||
Sbjct 3056313 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGG 3056372
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | ||||| | ||| ||||||| ||| || ||||||
Sbjct 3056373 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGCTCTCAACCTCCAGGGTGATGGTCTTG 3056432
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || || ||||| |||||||| |||||
Sbjct 3056433 CCTGTGAGGGTCTTGACAAAGATCTGCAT 3056461
Score = 98.7 bits (108), Expect = 8e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||| ||||||||| ||||||||||| || | | || ||||| ||
Sbjct 3056813 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCCAGCTG 3056872
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| || ||||| || | ||||| ||||| || || | |||||||||||| || ||
Sbjct 3056873 CTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 3056932
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | | |||| | ||||||||| | ||| || |||||||| ||
Sbjct 3056933 GGCCTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCGGT 3056992
Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336
||||||||| |||||||| |||||
Sbjct 3056993 CAGAGTCTTGACAAAGATCTGCAT 3057016
>seq6
Length=25711811
Score = 98.7 bits (108), Expect = 8e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||||||||| |||||||||||| ||| ||| | || || || || || || |||||
Sbjct 23416344 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAA 23416285
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
|| | ||||| ||||| || || | |||||||||||| || || ||| ||
Sbjct 23416284 GATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 23416225
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | | ||||| ||| ||||| | ||| || |||||||| || || ||||||||
Sbjct 23416224 GTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCAC 23416165
Query 45325 AAAGATTTGCAT 45336
|||||| |||||
Sbjct 23416164 AAAGATCTGCAT 23416153
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||||| ||| |||||||||||||||||| || |||| || | || ||
Sbjct 22963792 ACCAGGTGCAAGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGTGTACGTCCATCCTCG 22963851
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || || || || | ||||| ||||| || || | |||||||||||| |
Sbjct 22963852 AGCTGCTTGCCTGCAAAGATGAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGA 22963911
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | ||||| ||| ||||| | || || |||||
Sbjct 22963912 ATCTTCGCCTTCACATTGTCGATCTTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTT 22963971
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|| |||| |||||||||||||| ||||||
Sbjct 22963972 CCTGTCAAGGTCTTCACAAAGATCTGCATG 22964001
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395075142220252
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