Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq5 102 8e-17 seq4 95.1 1e-14 >seq5 Length=24206129 Score = 102 bits (112), Expect = 8e-17 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCGAGTCTTCGAGCTGTTTACC 139626 || ||||| || || ||||| ||| | ||| | |||| || |||||||| || || Sbjct 7376470 GTGGACTCCTTCTGGATGTTGTAACCTGCTAAG-GTGCGGCCATCCTCGAGCTGCTTGCC 7376528 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 |||| ||||||| || |||||||| || || ||||| || ||||| ||| | |||| || Sbjct 7376529 AGCAAAGATCAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCC-TGAATCTTTGCTT 7376587 Query 139687 TAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 | | | || | |||||| | | ||| ||||| | ||| | || ||||||||||| | Sbjct 7376588 TCACGTTGTCAATTGTGTCCGACGACTCAACCTCCAAGGTAATGGTTTTGCCGGTCAATG 7376647 Query 139746 TTTTTACGAATATTTGCAT 139764 | || || || |||||||| Sbjct 7376648 TCTTGACAAAGATTTGCAT 7376666 >seq4 Length=27574323 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | |||| || | ||| | || || || ||||| ||||| || || Sbjct 24792646 CCGCCCCGGAGGCGCAGGACAAGGTGCAGGGTGGATTCCTTTTGGATGTTGTAGTCTGCA 24792587 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || |||||||| || |||||| |||| ||||| ||||| || || || Sbjct 24792586 AGGGTGCGGCCATCCTCGAGCTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGG 24792527 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| || || | | || | ||||||| || ||| ||| Sbjct 24792526 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTATCGATCGTGTCGGAGGACTCGACC 24792467 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||||||||| | || || |||||||||||||| Sbjct 24792466 TCCAGGGTAATGGTCTTGCCGGTGAGGGTCTTCACGAATATTTGCAT 24792420 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||||||||| | || | | || || ||||| || ||| Sbjct 24792388 GTGGACTCCTTCTGGATGTTATAATCCGCGAGAGTACGCCCATCCTCAAGCTGCTTGCCA 24792329 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 || |||| || |||||||| || ||||| ||||| || ||||| ||| | || | || Sbjct 24792328 GCGAAGATAAGGCGTTGCTGGTCTGGAGGGATGCCCTCCTTGTC-CTGAATCTTAGCCTT 24792270 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | || |||| || ||| ||||| | ||| | |||||||| || | || Sbjct 24792269 CACATTGTCAATCGTATCGGAGGACTCAACCTCCAAGGTGATGGTCTTGCCAGTGAGGGT 24792210 Query 139747 TTTTACGAATATTTGCAT 139764 || |||||||| ||||| Sbjct 24792209 CTTAACGAATATCTGCAT 24792192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063925590400