Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq6 104 3e-17 seq2 91.5 2e-13 >seq6 Length=25711811 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 ||| || ||||| | || | || || | ||| |||| | | ||| |||| ||| || Sbjct 3088201 TCCACCTTGATCAACATAACGGGCAGTATCATTGAAAACACGTAGCATAGGAACAATCCC 3088260 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 |||||| || ||||| || || ||||||||| ||| | || |||||||| || ||| Sbjct 3088261 ATTGGAGGTTCCATTTGTTCCACGGATATAGCTCCCAGTAGCTCGAATATTGTGAACTGA 3088320 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 || ||| ||||| || || ||| || | || ||| || || ||||||||||| Sbjct 3088321 TACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAAAGTATCATAGAT 3088380 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| ||||| ||||| ||||| | || |||||||| Sbjct 3088381 TCCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 3088422 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||||||||||| |||||||| | || || |||||||| || ||||| Sbjct 7420786 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 7420845 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| || || ||||| || ||||| || |||| |||| || || || || ||||| Sbjct 7420846 CCCGGCATGAGCCCCCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAA 7420904 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTC 50114 ||| || || || ||| ||||| || || | ||| Sbjct 7420905 GATCCCCTCGACGCAGGCGAAGGCGACGAGGCGCTC 7420940 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 ||| || ||||| || | ||| || ||||| || |||||||| | ||||| |||| Sbjct 3088520 AGTGCCAGCATTGAAAAGGGTCGGTGAAGCATGAGTAAACCAGCGCTGAGACATCAGATG 3088579 Query 80394 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTA 80452 ||| |||| ||||| || || || || | ||| || || || || | || | ||||| Sbjct 3088580 GTAGGTCTTGATAGCAGACTCAATGTCATCCTTG-TGTATACCCACTGAAACTCTCATTA 3088638 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 ||||||| || || |||||||| | ||| | ||||| | |||||| | |||| Sbjct 3088639 ACATGTGTTGCGGCCTTTCAACAACCTTCCCGCCAAGTTTCAGGAGGTAAGACCTCTCCA 3088698 Query 80513 AAGTTTTAAAACCAAAATA 80531 ||| || ||||||||||| Sbjct 3088699 GAGTCTTGAAACCAAAATA 3088717 >seq2 Length=31686972 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 ||| || ||||| || | ||| || ||||| || |||||||| | ||||| | | Sbjct 30270478 AGTGCCAGCATTGAAAAGGGTTGGCGAAGCATGAGTAAACCAGCGCTGAGACATAATGTG 30270419 Query 80394 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTA 80452 |||||| | ||||| ||||| ||||| | ||| || || || | | || | ||||| Sbjct 30270418 GTACGTTTTGATAGCAGATTCAATATCATCCTTG-TGTATCCCAATAGAAACTCTCATTA 30270360 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 ||| ||||| |||||||| || | ||| | | ||| |||| |||||| | || | Sbjct 30270359 GCATATGCTGTGGTCTTTCCACAACCTTCCCAACAACTTTTAACAGATAAGATCTCTCAA 30270300 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 || ||||||||||| |||| || ||| |||| || ||||| || Sbjct 30270299 GGGTCTTAAAACCAAAGTAGTCATAGTCAAAATCTCTGTCATAAATTAT 30270251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268692259680