Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6 161 1e-34 >seq6 Length=25711811 Score = 161 bits (178), Expect = 1e-34 Identities = 395/584 (68%), Gaps = 15/584 (3%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || |||||||| | | || ||||| | ||||| ||||| ||| || || | Sbjct 7421362 TGTTCCCGATCAGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCT 7421303 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACT 125114 |||||| || ||||| || || ||| ||| | | | ||||| | | || | | Sbjct 7421302 GGACGGCGGAGGAGGTGGACCTCTCCGCCGACGCGCGCCACTGGGACGCCGCGCTGTCCC 7421243 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || ||||| | || || || ||| | | |||||||| |||| |||||| || ||| Sbjct 7421242 CCGAC-GAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATC 7421184 Query 125175 GTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTG 125233 || ||| || || | | ||| | || || || | | |||| ||| | Sbjct 7421183 GTGCTCGAGAACCTCGCCTCCAGGTTCATGTCC-GACGTGCAGGTCGCCGAGGC-TCGCG 7421126 Query 125234 CTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 | || ||||| ||||| ||| || |||||| | ||||| || |||||||| ||| Sbjct 7421125 CCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTGCTGC 7421066 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAAC-ACATGCTCTTTAACGCAATCGACACG 125351 | || | ||||| ||||| | || || || || ||| || ||| |||||||| Sbjct 7421065 TCGAGACCTACATCCGCGA-CGGCGCCGAGAAGGACCGGCTGTTCCGCGCCATCGACACC 7421007 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT-C 125410 || ||| | | || ||||| | |||| || || |||||||| | | | || | Sbjct 7421006 GTCCCGGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGCTGGATCGACGGTGGCGAGCGC 7420947 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TA 125469 |||| |||| | || || || |||||| ||| ||||| |||||||| ||||| | Sbjct 7420946 TTCG----CCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTC 7420891 Query 125470 GTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTA 125529 || |||| ||||||| |||||||||||||| || |||||||| || || || | | Sbjct 7420890 CTTCTGCG-CCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCA 7420832 Query 125530 ACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 ||||| | || || || ||||||||||| ||||| ||||| ||| Sbjct 7420831 ACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCC 7420788 Score = 87.8 bits (96), Expect = 3e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 125478 GCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTT 125537 |||||||| |||||||||||||||||||||||||| || || || | |||||| | Sbjct 1225228 GCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTCACCTTCTCCAACGAGCTC 1225287 Query 125538 ATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 || || || |||||||| || ||||| ||||| ||| Sbjct 1225288 ATCTCCCGCGACGAGGGTCTCCACTGCGACTTCGCC 1225323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059088841120